KEGG   Hydrogenophaga sp. RAC07: BSY239_1903
Entry
BSY239_1903       CDS       T04455                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
hyr  Hydrogenophaga sp. RAC07
Pathway
hyr02024  Quorum sensing
hyr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hyr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BSY239_1903 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BSY239_1903 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hyr03019]
    BSY239_1903 (hfq)
   03036 Chromosome and associated proteins [BR:hyr03036]
    BSY239_1903 (hfq)
Messenger RNA biogenesis [BR:hyr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     BSY239_1903 (hfq)
Chromosome and associated proteins [BR:hyr03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    BSY239_1903 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AOF87585
LinkDB
Position
complement(2011191..2011442)
AA seq 83 aa
MSNNKGQLLQDPFLNQLRREHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHA
ISTIVPGRPVQFSAAPADESAAP
NT seq 252 nt   +upstreamnt  +downstreamnt
gtgagcaataacaaaggccaactcttgcaagacccctttctgaaccagctgcgccgggag
cacgtgcccgtgtcgatttacctggtcaatggcatcaagttgcagggtcagatcgagtcg
ttcgaccagtacgtggttctcttgcggaacaccgtcacgcaaatggtctacaagcacgcc
atttccaccatcgttccgggccgccccgtgcagttctccgccgcacctgcggacgagtcc
gccgctccttga

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