Hydrogenophaga sp. RAC07: BSY239_1959
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Entry
BSY239_1959 CDS
T04455
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hyr
Hydrogenophaga sp. RAC07
Pathway
hyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSY239_1959 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyr03019
]
BSY239_1959 (rnr)
03016 Transfer RNA biogenesis [BR:
hyr03016
]
BSY239_1959 (rnr)
Enzymes [BR:
hyr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BSY239_1959 (rnr)
Messenger RNA biogenesis [BR:
hyr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BSY239_1959 (rnr)
Transfer RNA biogenesis [BR:
hyr03016
]
Prokaryotic type
tRNA degradation factors
BSY239_1959 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
MPSS2_N
Motif
Other DBs
NCBI-ProteinID:
AOF84607
LinkDB
All DBs
Position
complement(2076651..2078951)
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AA seq
766 aa
AA seq
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MNEKNSLLAEYEGVVSGHRDGHGFVIRDDGQADIYLPSNEMRAVLHKDRVKARIVRLDRK
GRPEGRVTEIVERSDSPIIGRLLQESGVWLVAPEDKRYGQDVLIPKGATGSAKPGQVVVV
QLTEPPALYGQPVGRVKEVLGEIDDPGMEIEIAVRKYGVPHEFSDAAMAQARALPDHVRA
ADHKGRVDLRDVPLVTIDGEDARDFDDAVYCEPAKVGKGKGWRLLVAIADVSNYVQTGSA
IDIDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPGVERLCMVCDMLVNAKGEVHAYQFY
PAVMFSHARFTYTEVAAILQNTRGPEASQRKALVPYLLNLHDVYRALLAARGERGAVDFE
TTETQIVCDESGRIEKIIPRTRNDAHKVIEEAMLAANVCSADFISEGKHTGLFRVHEGPT
PEKQEILRNYLKAMGVSQTIGDNPKPADFQKIAAATKDRPESQQIHTMLLRSMQQAIYTP
INSGHFGLAFEAYTHFTSPIRRYPDLLVHRVIKAILARKRYELPALPTPGEAHAKLSKRL
ASRAKPLAVGEVAKKPSVDTLAWQAAGLHCSANERRADEASRDVEAWLKCKYMREHLGEE
FSGVVSSVTSFGLFVTLDAMYVEGLVHITELGGEYFRFDEARQELRGERTGIRYALGSRV
QVQVSRVDLDGRRIDFRLVSGDDDLVLRAMRDKTGQTGAAEGAAGAGRGGKAHRGRATET
VVAGRPDRAPRAPVSEAKTTGKKAASKKSDRGAARSTANQPRKSRR
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgaaaaaaacagcctgttggccgaatatgaaggtgtcgtctccggtcatcgggac
ggccatggttttgtgatccgtgacgatggtcaggccgatatttatctgccttccaacgag
atgcgggcggtgttgcacaaggaccgggtcaaggcccgtatcgtgcgccttgaccgcaag
ggccgtcccgaaggacgcgtcacggaaatcgtcgaacgctccgattcgccgatcattggc
cgcctgctgcaagagagcggtgtgtggctggtggcgcccgaggacaaacgctacgggcag
gatgtgttgatccccaaaggcgccaccggttcggccaagccgggccaggtggtggtggtg
caactcaccgagccgcccgcgctgtacgggcagcctgtggggcgtgtgaaagaggtgctg
ggcgagatcgacgaccccggcatggaaatcgaaattgccgttcgcaagtatggcgtgcca
cacgagttttccgacgcagcgatggcccaggcccgcgcactgcccgaccatgtgcgggca
gcggaccacaaaggccgtgtggacctgcgcgatgtgcccctggtcaccatcgacggcgaa
gatgcgcgcgattttgacgatgccgtgtactgcgagccggccaaggtgggcaaaggcaag
ggctggcgtttgctggtggcgatcgctgacgtgagcaactatgtgcagaccggctctgcg
atcgacatcgacgcctacgaccgcgccacgtcggtgtattttccgcgccgtgtgattccc
atgctgccggaaaaactctccaacggtctgtgttcgctcaaccccggagttgagcgactg
tgcatggtgtgcgacatgctggtcaatgccaagggcgaggtgcacgcctaccagttctat
ccagcggtgatgttcagccacgcgcgattcacatacaccgaagtcgcggccatcctgcag
aacacgcgcggccccgaggccagccagcgcaaggcgctcgtgccttaccttctcaacctg
cacgacgtgtaccgtgcgctgctggcggcgcgtggcgaacgcggcgcggtggacttcgag
accaccgaaacacagatcgtttgtgacgagtcgggccgcatcgagaagatcattccgcgc
acccgcaacgatgcgcacaaggtgattgaagaagcgatgctggcggccaacgtctgctcg
gcggatttcatcagcgaaggcaaacacaccggacttttccgtgtgcacgaaggccccacg
cccgagaagcaggagatcctgcgcaactacctgaaggccatgggtgtttcgcagaccatt
ggcgacaaccccaagccggccgatttccagaagatcgcggcagccacgaaggaccgtccc
gagtcgcaacagatccacacgatgctgctgcgctccatgcagcaggcgatctacaccccg
atcaacagcggccacttcgggctggcgttcgaggcctacacccacttcaccagcccgatc
cgccgctacccggacctgctggtgcaccgcgtgatcaaggcgatcctggcgcgcaaacgc
tacgaattgccggccttgcccacgccgggtgaggcgcacgccaagctgagcaaacgcctg
gccagccgcgccaaaccgctggcggtgggcgaggttgcaaagaagccctcggtggacacg
ctggcgtggcaggccgctggcctgcactgcagtgccaacgaacgccgcgccgacgaggcc
agcagggatgtggaagcctggctcaagtgcaaatacatgcgcgagcacctgggcgaggaa
ttcagtggtgtcgtgagttcggtcaccagctttggtcttttcgtcacgctggacgccatg
tacgttgaaggcctggttcacatcaccgaactcggtggcgagtatttccgctttgacgaa
gcgcgccaggaattgcgcggtgaacgcaccggtatccgttacgcgttgggcagccgcgtg
caggtgcaggtgagccgtgtggatctggacggtcggcgcatcgacttccgtttggtgagt
ggtgacgacgacctggtgttgcgcgcgatgcgcgacaagacaggtcagaccggtgctgcg
gaaggcgctgctggtgcagggcgtggcggcaaggcccaccgaggccgtgccaccgaaacc
gtcgttgcgggccgtcccgatcgggcacctcgtgcccctgtctcggaagccaaaacgacg
ggcaagaaggctgcaagcaagaagtcggaccggggggctgcccgcagcaccgccaaccag
ccccgcaaaagccggcgttga
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