Hydrogenophaga sp. RAC07: BSY239_2404
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Entry
BSY239_2404 CDS
T04455
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hyr
Hydrogenophaga sp. RAC07
Pathway
hyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSY239_2404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyr03019
]
BSY239_2404
Enzymes [BR:
hyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BSY239_2404
Messenger RNA biogenesis [BR:
hyr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSY239_2404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
DUF621
Motif
Other DBs
NCBI-ProteinID:
AOF86715
LinkDB
All DBs
Position
2557085..2558980
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AA seq
631 aa
AA seq
DB search
MPPAPWTGASKKMTFDDLNLAPAIVQAVREHGYETPTPIQAEAIPAVLAGRDLLGGAQTG
TGKTAAFTLPLLQRLADGERAKNRFGGVAIRALVLTPTRELAAQVEESVRTYGKHLTLTS
TVVFGGVGMNPQINAMKRGVDVLVATPGRLLDLQQQGFLDLSGVQMLVLDEADRMLDMGF
IHDVKKILALVPKEKQSLLFSATFSDEIRDLASNLLKDPLHIQVTPRNTTVQRITQVIHP
VGRGKKKALLVHIINQHNWSQVLVFTRTKFGANNVAEFLTKNGIQAMALHGNKSQGARTQ
ALAGFKSGDIRALVATDIAARGIDIDELPHVVNYEIPNVCEDYVHRIGRTGRAGNDGAAV
NLVSLDEEGFMMEIERFTKQRIPVQMFPEFMPEPGEKAEPIAMGRQTIWGGAGKPPSRDV
MAAAAKAARTEMMQRVREKKAGEPQQARGNGGGGQRQRPAGDGAQIDGPRGEGRRGGGGN
GGGQRANGGGGNGQPRGNNGPRNGGGQGPRPPRQQADRGDRMDRAPREDRGPREDREPGA
ERQPGPNAHLGSLRIKEPRPRAANPGGQPDPLRTSIDAMRTGNRGGKGGGGGGGGRGGPR
GGGGGGGGGGGGGGGGGGNADPLRTNYGRIR
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgcccccagcgccctggacgggcgcctccaaaaaaatgacctttgacgacctgaatctg
gccccggccatcgtgcaagccgtgcgtgagcatggctacgaaactcccacacccatccag
gccgaggcgattcccgccgtgctggccgggcgcgacctgctcggtggcgcccagacgggc
accggcaagaccgctgccttcaccctgccgctgctgcaacgcctggccgacggcgaacgc
gccaagaaccgtttcggcggcgtggccatccgcgccctggtgctcacccccacgcgcgaa
ctcgctgcgcaggttgaagagtcggtgcgcacctatggcaaacacctcacgctgacctcc
accgtcgtcttcggcggtgtgggcatgaacccgcagatcaacgccatgaaacgcggcgtc
gatgtgctcgtggccacccccggccgcctgctcgacctgcagcagcaaggtttcctcgac
ctctccggcgtgcagatgctggtgctggacgaagccgaccgcatgctcgacatgggcttc
atccacgacgtgaagaagatcctggcgctggtgccgaaagaaaagcagagcctgctgttc
tccgccaccttcagcgacgagatccgcgacctcgcgagcaacctgctcaaggacccgctg
cacatccaggtgaccccgcgcaacaccacggtgcagcgcatcacccaggtgatccacccc
gtgggccgcggcaagaagaaagccctgctggtgcacatcatcaaccagcacaactggagc
caggtgctggtgttcacccgcaccaagttcggcgccaacaacgtggccgagttcctcacg
aaaaacggcatccaggccatggccctgcacggcaacaagagccagggtgcccgcacccag
gcgctggccggcttcaagagcggcgacatccgcgccctggtggccaccgacatcgcagcg
cgcggcatcgacatcgacgagctgccgcacgtcgtgaactacgagatcccgaacgtctgc
gaagactacgtgcaccgcatcggccgcaccggccgtgccggcaacgacggtgctgccgtc
aacctcgtgagcctggacgaagaaggcttcatgatggagatcgagcgcttcaccaagcag
cgcattccggtgcagatgttccccgagttcatgcccgagccaggtgagaaggccgagccc
atcgccatgggccgccagaccatctggggcggtgccggcaagccgccgagccgcgacgtg
atggctgcagccgccaaggccgcgcgcacggaaatgatgcagcgcgtgcgcgagaaaaaa
gccggtgagccgcagcaggcccgcggcaacggcggtggtggccagcgccagcgcccggcc
ggtgacggcgcccagatcgacggaccgcgcggcgaaggccgccgcggtggtggcggcaac
ggtggcggtcagcgtgcgaacggtggtggtggcaacggccaaccccgcggcaacaacggt
ccacgcaacggtggcggccagggcccacgcccaccgcgccagcaggccgatcgcggtgac
cgcatggaccgcgcaccgcgcgaagaccgtggcccgcgtgaagaccgcgaacccggcgcc
gagcgccagcccggcccgaacgcccacctgggcagcctgcgcatcaaggaaccgcgccca
cgcgcggccaacccgggcggccagcccgacccgctgcgcaccagcatcgacgccatgcgc
accggcaaccgcggtggcaaaggtggcggcggtggtggcggcggccgaggcggcccacgt
ggtggcggtggcggtggcggtggcggtggtggtggcggtggtggtggtggtggcaacgcc
gatcccctgcgcaccaactacggccgcatccgctga
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