Hydrogenophaga sp. RAC07: BSY239_2426
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Entry
BSY239_2426 CDS
T04455
Symbol
pcnB
Name
(GenBank) poly(A) polymerase family protein
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
hyr
Hydrogenophaga sp. RAC07
Pathway
hyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSY239_2426 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyr03019
]
BSY239_2426 (pcnB)
Enzymes [BR:
hyr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
BSY239_2426 (pcnB)
Messenger RNA biogenesis [BR:
hyr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BSY239_2426 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
AOF86587
LinkDB
All DBs
Position
complement(2578605..2580269)
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AA seq
554 aa
AA seq
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MIKKFIDRLLGKSPAAPARRASPFGKREDVPVSVHGIDPKLVDQRALDVVHTLKQAGFDA
YIVGGAVRDLLLGLRPKDFDVATSATPEQVKGLFRRAFIIGRRFRIVHVIYGRGREHEMI
EVSTFRAYLDSADAEQVAGNERTSKGELAGMKHAVDASGRVLRDNVWGPIEHDAARRDFS
INAMYYDPESQTVVDFHHGIRDAKKKTLRMIGDAATRYREDPVRIIRAVRFAAKLSGLGF
TFDAKTLEPLASSRKLLLDVPQSRLFDEMLKLLQTGHALASVAQLKAVGLDTGIYPLLDV
VVQRADDEFVKLALQDTDRRVGEGKPVAPSFLLACVLWADVRKGWSQRLNARPGQRPPPP
FAALQDAVDEAFDARIGDVSGRGKLGADMREIWMMQPRFDKRVGTSPFSLVDQARFRAGF
DFLRLRAQVGEVEEELAHWWETFSMASDDMREDMVDAQRRDNLAKPGAGKARRVKRSDDD
HPANAGASTEALAPDPRFRAVDAGGDERDDDLAGESDDGAESAAPTDGSAPAKKRRRRRR
KPGGTAASGEPGPV
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagaaattcattgacaggctgctcggcaaatcgccggcggcgcccgcgcgccgc
gccagccctttcggcaaacgcgaagacgtgccggtctcggtgcacggcattgaccccaag
ctggtcgaccagcgtgcgctcgacgtggtgcacaccctcaaacaagccggtttcgacgcc
tacatcgtgggcggcgcggtgcgcgacctgctgctgggcctgcgaccgaaagacttcgac
gtggccaccagcgccacgcccgagcaggtcaagggcctgttccgccgcgctttcatcatc
ggccggcgctttcgaatcgtgcacgtgatctacggccgcggccgtgaacacgaaatgatc
gaggtctcgaccttccgcgcctacctggacagcgccgacgccgagcaggtggcgggcaac
gagcgcaccagcaagggcgaactcgccggcatgaaacacgcggtggacgccagcgggcgc
gtgctgcgcgacaacgtgtggggcccgatcgagcacgacgccgcgcgccgggacttcagc
atcaacgccatgtactacgaccccgagtcgcagaccgtggtcgatttccaccacggcatc
cgcgacgcgaaaaagaagacgctgcgcatgatcggtgatgccgccacgcgttaccgcgaa
gacccggtgcgcatcatccgcgccgtgcgttttgcggccaagctcagtggcctgggattc
acgtttgatgccaagacgctggagccgctggcgtcctcgcgcaagctgctgctggacgtg
ccgcaaagccgcctgttcgacgaaatgctcaagctgctgcagaccggtcacgcgctggcc
agcgtggcgcagctcaaggccgtgggcctggacaccggcatctacccgctgctcgacgtg
gtggtgcagcgcgccgacgacgaatttgtgaagctcgccctgcaggacaccgaccgccgt
gtgggcgaaggcaagccggtggcgccgagtttcctgctcgcctgcgtgttgtgggccgac
gtgcgcaagggatggagccagcgcctgaacgcccgcccgggccaacgcccgccgcccccg
ttcgcggccctgcaggacgcggtggacgaagccttcgatgcgcgcatcggcgatgtgtcg
ggccgcggcaagctcggcgccgacatgcgcgagatctggatgatgcagccccgcttcgac
aagcgcgtgggcacctctccgttcagcctggtggaccaggcgcgctttcgcgccggcttc
gacttcctgcgcctgcgcgcgcaggtgggcgaagtggaagaagagctggcccattggtgg
gaaaccttcagcatggccagcgacgacatgcgcgaagacatggtggacgcacagcgccgc
gacaacctggccaagcccggtgccggcaaggcacggcgcgtgaagcgcagcgacgacgac
catccggcgaacgccggcgcgtcgaccgaagcactcgcccccgatccccgttttcgcgcg
gttgatgccggtggagacgagcgggatgacgatctcgctggcgaatccgatgacggtgcc
gaatccgctgcacccaccgacggctcggccccggccaagaaacgccgccgtcgccgccgc
aaacccggtggcaccgccgccagtggtgagccgggaccggtctga
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