Hydrogenophaga sp. RAC07: BSY239_3698
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Entry
BSY239_3698 CDS
T04455
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hyr
Hydrogenophaga sp. RAC07
Pathway
hyr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hyr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BSY239_3698 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyr03021
]
BSY239_3698 (rpoC)
03400 DNA repair and recombination proteins [BR:
hyr03400
]
BSY239_3698 (rpoC)
Enzymes [BR:
hyr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BSY239_3698 (rpoC)
Transcription machinery [BR:
hyr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BSY239_3698 (rpoC)
DNA repair and recombination proteins [BR:
hyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BSY239_3698 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AOF87529
UniProt:
A0A1B3M353
LinkDB
All DBs
Position
complement(3923584..3927807)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKSLLDLFKQFTPDDHFDAIRIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLILDMTLRDIERVLYFEAYVVTDPGMTPLKKFGIMSEDDYDAKRKEFGDEFVAKM
GAEGIKELLQAIDLDIEIEKLRNDLTGSELKIKKNAKRLKVLEAFKKSGIKPEWMVLDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVEAGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQIEART
LMLASNNILFPANGEPSIVPSQDVVLGLYYATRDRINAKGEGMIFADLSELLRALDNGVV
EITAKISVRLTQQTLDKATGEWTSSTSLVDTTVGRALLSEILPRGLPFDVLNKPLKKKEI
SRLINTSFRKCGLKETVVFADKLLQNGFRLATRAGISIAVDDMLVPKEKPAIIDRAENEV
KEIAQQYASGLVTAGERYNKVVDIWGKAGDEISKVMMAQLAKQKTTDRHGKEVDQESFNS
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVNTQDCGTTNGTLMRAIVEGGEVIESLRDRILG
RTTAEEVTHPETRELLVPAGEMLDEDMLDMLEAAAVDEVKVRTALTCETRFGICAKCYGR
DLGRGGLVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSSGVIGFN
ATMRYVTNTKGELVVISRSGEIIIHDEHGRERERHKVPYGAILSVKADQNIKAGAILANW
DPLTRPIITEFAGQVRFENVEEGLTVAKQVDDVTGLSTLVVIDPKRRGVAKVVRPQVKLI
DAQGNEVKIPGTDHSVTIGFQIGSLIQVRDGMDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARSPKDKGMLAEMTGTVSFGKETKGKVRLQITDPEGKVWDDLIPKEKNILVHEGQ
VVNKGESVVDGPADPQDILRLLGMEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVDSVGDSSYIAGEQVERSEILNTNDSLRAEGKLPAVFSNILLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHEARKVKEKMDDEERRA
IAEADAVSLAADQAEQADASSTNESAE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaatccttgctcgacctgttcaagcagttcacgcccgatgaccacttcgatgccatc
cgcatcggcctggcttcgccggaaaaaatccgctcgtggtccttcggtgaagtcaaaaag
cccgagaccatcaactaccgcacgttcaagcccgagcgcgatggtctgttctgcgccaag
atcttcggccctatcaaggactacgaatgcctgtgcggcaagtacaagcgtttgaagcac
cgcggtgtcatctgcgagaagtgcggcgttgaagtcacgcagaccaaggtgcgccgcgag
cgcatgggtcacatcgatctggccgctccttgcgcccacatctggttcctgaagtcgttg
ccatcgcgtctgggcctgatcctggacatgacgctgcgcgacatcgaacgtgtgctctat
ttcgaagcctacgtggtgaccgaccccggcatgaccccgctgaagaagttcggcatcatg
tccgaggacgactatgacgccaagcgcaaggaattcggcgacgagttcgtggccaagatg
ggcgccgagggcatcaaggaactgctgcaggccatcgacctcgacatcgagatcgagaag
ctgcgcaacgacctgaccggctccgagctcaagatcaagaagaacgccaagcgcctcaag
gtgctggaagccttcaagaagtcgggcatcaagcccgagtggatggtgctcgacgtgctg
cccgtgctgccaccggacctgcgtccgctggtgccgctggacggtggccgcttcgctacc
tccgacctgaacgacctgtaccgccgcgtcatcaaccgcaactcgcgtctgcgccgcctg
ctggagctgaaggctcctgaaatcatcgcgcgcaacgagaagcgcatgctgcaggaagcg
gtcgactcgctgctggacaacggccgccgtggcaaggccatgacgggcgccaacaagcgc
gcgttgaagtcgctggccgacatgatcaagggcaagagcggtcgtttccgccagaacttg
ctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggcccaacgctcaag
ctgcaccagtgcggcctgcccaagctgatggcccttgagctgttcaagccgttcatcttc
tcgcgcctggaagccatgggcatcgcgaccaccatcaaggccgcgaagaaggaagttgaa
gccggcacgccggtggtgtgggacatcctggaagaggtgatcaaggagcacccggtgatg
ctcaaccgcgctcccacgctgcaccgcctgggcatccaggcgttcgagcccatcctgatc
gaaggcaaggcgatccagctgcacccgctggtctgcgctgcgttcaacgccgacttcgac
ggcgaccagatggccgttcacgtgccgctgtcggtggaagcgcagatcgaagcccgcacc
ctgatgctggcctcgaacaacatcctgttccctgccaacggcgagccctccatcgttccg
tcgcaagacgtggtgctgggtctgtactacgccacccgtgatcgcatcaacgccaagggc
gagggcatgatctttgccgatctgtccgagctgctgcgcgcactcgacaacggcgtggtg
gaaatcaccgccaagatcagcgtgcgcctgacccagcagacgctggacaaggccacgggt
gagtggacgtcgtccacctcgctggtcgacaccaccgtgggccgtgcgctgctctccgag
atcctgccgcgtggcctgccgttcgacgtgctgaacaagccgctgaagaagaaggaaatc
tcgcgcctgatcaacacctcgttccgcaagtgcggcctgaaggaaaccgtggtgttcgcc
gacaagttgctgcaaaacggcttccgtctggccacgcgcgccggtatctcgatcgccgtg
gacgacatgctggtgcccaaggagaagccggccatcatcgaccgcgccgaaaacgaggtg
aaggaaatcgcccagcagtacgcgtccggtctggtgaccgcgggcgagcgctacaacaag
gtggtggacatctggggcaaggccggtgacgagatctccaaggtcatgatggcccagctg
gccaagcagaagaccaccgaccgccacggcaaggaagtggaccaggagtcgttcaactcc
atctacatgatggccgactcgggtgcgcgtggctccgctgcgcagatccgccagcttgcc
ggcatgcgaggcctgatggccaagcctgacggctccatcatcgagacccccatcacggcg
aacttccgtgaaggtctcaacgtgttgcagtacttcatctcgacccacggtgcgcgtaaa
ggcctggccgacacggcgctgaagaccgccaactcgggctacctcacgcgccgcctggtg
gacgtgacgcaggatctggtggtcaacacccaggactgcggcaccaccaacggcacgctg
atgcgcgccattgttgaaggtggtgaagtcatcgaatcgctgcgcgaccgcattctgggt
cgcaccacggccgaggaagtgacgcaccccgaaacgcgcgaactgctggtgcccgccggc
gagatgctcgacgaagacatgctcgacatgttggaagccgctgcggtggacgaagtgaaa
gtgcgcaccgcactgacctgcgaaacccgcttcggcatctgcgccaagtgctacggccgc
gatctgggccgcggtggtctggtcaacatcggtgaagcggtcggcgtgattgctgcccag
tccatcggtgaacccggtacccagctgaccatgcgcaccttccacatcggtggtgcggct
tcgcgtgcggctgtggcctccagcgtggaagccaagtccagcggcgtgatcggcttcaac
gccaccatgcgctacgtgaccaacaccaagggcgaactggtggtgatctcgcgttccggc
gaaatcatcatccacgacgaacacggtcgtgagcgcgagcgccacaaggtgccgtacggc
gcgatcctgtcggtgaaagccgaccagaacatcaaggccggcgccatcctggcgaactgg
gatccgctgacgcgcccgatcatcacggaattcgctggtcaggtgcgtttcgagaacgtc
gaggaaggcctcaccgtggccaagcaggtggacgatgtcactggtctgtcgaccctggtg
gtgatcgatccgaagcgccgcggcgtggccaaggtggtgcgtccacaggtcaagctgatc
gacgcgcaaggcaacgaagtgaagatcccgggcaccgaccactcggtgaccatcggcttc
cagatcggctcgctgatccaggtgcgcgacggcatggacgtgggccctggcgaagtgctg
gcccgcatcccggtcgaaggtcagaagacgcgcgacatcaccggcggtctgccgcgtgtg
gccgagttgttcgaagcccgcagcccgaaagacaagggcatgctggccgagatgaccggt
actgtgtcgttcggcaaggagaccaaaggcaaggttcgcctgcagatcaccgaccccgaa
ggcaaggtgtgggacgacctcatccccaaggaaaagaacatcctggtgcacgaaggccag
gtggtcaacaagggcgagagcgtggtggacggcccggccgatccgcaagacatcctgcgc
ctgctgggcatggaagagctggcccgctacatcgttgacgaagtgcaggacgtctaccgc
ctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgc
cgtgtggtcgtggacagcgtgggtgattcgagctacatcgccggtgagcaggtcgagcgt
tcggagatcctcaacaccaacgactcactgcgtgccgaaggcaagctgcccgcggtgttc
agcaacatcctgctgggtatcaccaaggcttcgctgtcgaccgactcgttcatctcggcg
gcttccttccaggaaaccacccgggtgctgaccgaggcggccatcatgggcaagcgcgac
gaactgcgtggtctgaaggaaaacgtgatcgtgggtcgtctgatcccggccggtaccggc
atggcctaccacgaggcgcgcaaggtcaaggagaagatggacgacgaagaacgccgtgcc
attgccgaagccgatgccgtatcgctggcagccgaccaggccgagcaggccgacgcttca
agcaccaacgagtcggccgaataa
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