Hydrogenophaga sp. RAC07: BSY239_418
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Entry
BSY239_418 CDS
T04455
Name
(GenBank) RNB domain protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
hyr
Hydrogenophaga sp. RAC07
Brite
KEGG Orthology (KO) [BR:
hyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hyr03016
]
BSY239_418
Enzymes [BR:
hyr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BSY239_418
Transfer RNA biogenesis [BR:
hyr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BSY239_418
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Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AOF87605
UniProt:
A0A1B3M3F6
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All DBs
Position
complement(463148..465232)
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AA seq
694 aa
AA seq
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MHILFDEAGKLLTGRLLSEAESSLQVELDSGKRVKVKAVNALLRFEKPAPAALMASATEL
STDMDLALAYEFAPEDEFGFADLAREYFNSSASTAEQVAALLCLQGAPHYFRRAGKGRYK
KAPADILAQALAGIEKKKQQQAQIEAWAAELAGGTCPEPVRQQLYKILFKPDKNAPEYKA
VVEAARSSHTAPLTLLQNAGAISSAYQFHWQRFLFDQFPKGTGFPALQAPVITDELPLAT
VQAFSIDDSHTTEIDDALSLQGLGSGSVTLGIHIAAPGLAIVPESAIDQVARHRLSTVYM
PGHKITMLPDEVVQAYTLMAGRDCPAVSLYVTFDEATLAITDTRTVLERVPIAQNLRHDQ
LDTVITEAWLSGEAPADNAVPEIAALQPTLAFIFTLARHLKAQREVVRGKPENFTRPDYT
FRLEGKTGDEPVGDETVVIGTRQRGAPLDLMVAEAMILANSTWGNWLNDCGVPGIYRSQA
SMAPGVKVRMGTKAQPHAGIGVKSYAWSTSPLRRYVDMVNQWQIIACARHGKTAALAAPF
KPKDANLFSIISAFDAAYTAYNGFQNGMERYWTLKHLQQSGTTELTATLVKDNLVRADSL
PLVLPVMGADGLPRGAHVRVRLGEIDDITLDVHGTVIERLDLPVDDTADDSAGEDGEDEE
LSSPLALAIDVNEGEGSEPAAQPTGATDPAGHSA
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgcacatcctgtttgatgaagccggcaagttgttgaccggccgcctcctgtccgaggct
gaaagttccctgcaagtcgagctcgattccggcaagcgcgtcaaggtcaaggcggtcaac
gcgctgctgcggtttgaaaaacccgcccccgccgccttgatggcctcggccaccgagctg
tccaccgacatggatctggccctggcctacgaattcgcccccgaagacgagttcggcttt
gccgacctggcgcgcgagtacttcaacagcagcgccagcaccgccgagcaggtggccgcg
ctcttgtgtctgcagggtgcgccgcactactttcgccgcgccggcaagggccgctacaaa
aaggcgccggccgacatcctggcccaggcgctggccggcatcgagaagaaaaagcagcag
caggcgcagatcgaagcctgggcggccgaactcgccggtggcacctgccccgagccggtg
cgccagcagctctacaagatcctcttcaagcccgacaagaatgcgcccgagtacaaggcc
gtggtcgaggccgcgcgcagcagccacaccgcgccactgaccctgttgcagaacgccggc
gccatcagcagcgcctaccagttccactggcagcgtttcctgttcgaccagttccccaag
ggcaccggcttcccggcgctgcaggctccggtgatcaccgacgagctgccgctggccacc
gtgcaggccttctccatcgacgactcgcacaccaccgagatcgacgacgcgctctcgctg
caaggcctgggcagtggttcggtcacgctgggcatccacatcgcagcgcccggtctggcc
atcgtgcccgagagcgccatcgaccaggtggcgcgccaccgcctgtccaccgtctacatg
ccgggccacaagatcaccatgctgcccgacgaggtggtgcaggcctacacgctgatggcc
gggcgggactgcccggcggtctcgctctacgtcacgtttgacgaagccacgctggccatc
accgacacgcgcaccgtgctcgaacgggtgccgatcgcgcagaacctgcgccacgaccag
ctcgacaccgtgatcaccgaggcctggctctcgggggaagccccggccgacaacgccgtg
cccgagatcgccgcgctgcagcccacgctggccttcatcttcacgctggcccgccacctc
aaggcgcaacgcgaggtggtgcgcggcaagcccgaaaacttcacgcgacccgactacacc
ttccgcctggaaggcaagaccggcgacgagccggtgggcgacgagacggtggtgatcggc
acgcgccagcgcggtgcgccgctggacctgatggtggccgaggccatgatcctggccaac
agcacctggggcaactggctcaacgactgcggcgtgcccggcatctaccgcagccaggcc
agcatggcgccgggcgtgaaggtgcgcatgggcaccaaggcgcagccgcacgccggcatc
ggtgtgaagagctacgcctggagcacctcgcctctgcgccgttatgtggacatggtcaac
cagtggcagatcattgcctgcgcgcgtcacggcaagaccgccgcactcgcagcaccgttc
aagccgaaagacgcgaacctgttttcgatcatcagcgcgttcgacgccgcctacaccgcc
tacaacggtttccagaacggcatggagcgttactggacgctcaagcacctgcagcaaagc
ggcaccaccgaactcaccgcgacgctggtgaaagacaacctcgtgcgtgcggattcgctg
cccctggtgctgccggtgatgggcgccgacggcctgccgcgcggtgcgcatgtgcgcgtc
aggctcggcgagatcgacgacatcacgctcgatgtgcacggcaccgtgatcgagcgcctg
gacctgccggtggacgacacggcggacgacagcgcgggcgaggatggggaagacgaggaa
ctctcgtcgccgctggccctggccatcgacgtgaacgaaggcgagggcagcgagcccgcc
gcccagccgaccggggccaccgacccggcgggccattcggcctga
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