Hydrogenophaga sp. RAC07: BSY239_708
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Entry
BSY239_708 CDS
T04455
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hyr
Hydrogenophaga sp. RAC07
Pathway
hyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSY239_708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyr03019
]
BSY239_708
03009 Ribosome biogenesis [BR:
hyr03009
]
BSY239_708
Enzymes [BR:
hyr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BSY239_708
Messenger RNA biogenesis [BR:
hyr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BSY239_708
Ribosome biogenesis [BR:
hyr03009
]
Prokaryotic type
rRNA processing factors
BSY239_708
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
AOF87789
UniProt:
A0A1B3M3V3
LinkDB
All DBs
Position
complement(747530..750709)
Genome browser
AA seq
1059 aa
AA seq
DB search
MKRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRQYFAAGVPVNQARINDVIKEGQELLVQVEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGEDRQELKQALDQLEYPNGMSIIARTAGIGRDAPELQ
WDLNYLLKLWNAIDGAAQGGKGAYLIYQESSLVIRAIRDYFNGDIGEILIDTDDIFEQAH
QFMSHVMPEHGHRVKRYRDDAPLFSRFQIEHQIETAYSRTVQLPSGGAIVIDQTEALVAV
DVNSARSIKGGDIEDTATRTNLEAADEVARQARLRDLGGLIVIDFIDMDESKNRRDVENR
LRDALRQDRARVQFGAISKFGLLEMSRQRLKPALNEGSSIPCPRCGGSGHIRDTESSALQ
ILRIIQEESLKDSTAAVLVQVPVEVASFLLNEKRTEITKIELKQRISVLLVPNKSLDTPN
YKLERLKHDDPRLDNLDASYKLADEPDEATGFTRRSQERTNKQEPVIKGVLPDGPAPVAA
PRPEVVAPVAAPVVAKAAAAPVAAAPAEKGFFGWLKSLFGGADAPPVAPKPAVAAPAAKP
GAREERADGRGPREGGREGGRDGRSRGGRGGAEGRGQREGGREGGRGGRDGGREGRPVEG
REPRAEGRVEGRPEGRAEGRGEGRRGEGRGEPRGEGRNEARGEPRAEGRGEGRGEPRGEG
RGERGEGRRGDGRRDNRRDAAPVDGAAPAELVNGAPVNAPGEASEGGDNQRRGRGGRGGE
NRRRPAEGAEGQAPVTQNDAAPVAQDAGDNPEAARESEMPEGGDGAPRAPRERRSRDRYG
RDRRERGPRDANGAPEGAEGETPAEMPASEVAFAAASTPVVSAEPMDEAPTRSYFSLPVD
AAPAPVVNEPPLAAPAPVAAPVAAPVMEQAAPAPVMAPAVMAAVAAPVAAPAPVAAPAPA
AKPAAPVVAEAPAARGLPKVGSFTLPLDAMQQVAQASGLEWVNSNADKVAQVQAAIAAEP
KPVHVPREPKPAVVLDDGPLVLVETRKDLRDMQLPFEAR
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgatcaacgccacgcaggccgaagagcgccggctggccattgtggac
gggcaaaaactgctcgactacgaaatcgaaatcgaagggcgcgaacagcgcaagggcaac
atctacaaggccgtcgtcacgcgcgtcgagccctcgctggaagcctgcttcgtggactac
ggcgaagaccgccacggcttcctgccgttcaaggaaatctcgcgccagtatttcgccgcg
ggtgtgccggtcaaccaggcccgcatcaacgacgtcatcaaggaaggccaggaactgctg
gtccaggtggagaaagaagaacgcggcaacaagggcgccgccctcaccacgttcgtgagc
ctggccggccgctacgtggtgctgatgccgaacaacccgcgcggcggtggcgtgagccgt
cgcatcgagggcgaagaccgccaggaactcaagcaggcgctggaccagcttgagtaccca
aacggcatgagcatcatcgcgcgcaccgccggcatcggccgcgacgcgcccgaactgcag
tgggacctgaactacctgctcaagctgtggaacgccattgacggcgcagcccagggcggc
aagggcgcctacctgatctaccaggaatcgagcctggtgatccgcgccatccgcgactac
ttcaacggcgacatcggcgagatcctgatcgacaccgacgacatctttgaacaggcgcac
cagttcatgagccacgtgatgcccgagcacggccatcgcgtgaagcgctaccgcgacgac
gcaccgctgttctcgcgcttccagatcgaacaccagatcgaaaccgcctacagccgcacc
gtgcagctgcccagcggcggcgcgatcgtgatcgaccagaccgaagcgctggtggcggtg
gacgtgaactcggcccgctccatcaagggcggcgacatcgaagacaccgccacccgcacc
aacctggaagcggccgacgaagtggcccgccaggcccgcctgcgcgacctgggtggcctg
atcgtgatcgacttcatcgacatggacgagtcgaagaaccggcgcgacgtggaaaaccgc
ctgcgcgacgcgctgcgccaggaccgcgcccgtgtgcagttcggcgccatcagcaagttc
ggcctgctggaaatgagccgtcagcgcctcaagcccgcgctgaacgaaggttcgtccatc
ccctgccctcgctgcggtggctcgggccacatccgcgacaccgagtcgtcggcgctgcag
atcctgcgcatcatccaggaagagtcgctcaaggacagcacagccgccgtgctggtgcag
gtgccggttgaagtggccagcttcctgctcaacgagaagcgcaccgagatcaccaagatc
gaactcaagcagcgcatcagtgtgctgctggtgcccaacaagtcgctggacacgcccaac
tacaagctcgagcgcctgaagcacgacgatccgcgcctggacaacctggacgccagctac
aaactggccgacgagccggacgaagccaccggcttcacccgccgcagccaggaacgcacc
aacaaacaagagccggtgatcaagggcgtgttgcccgatggtccggcacccgtggcggca
ccccgccccgaggtggtggcaccggttgcggcgcccgtggtcgccaaggcagcggccgct
cccgtggctgctgcaccggctgaaaaaggcttcttcggctggctcaagagcctgttcggt
ggtgccgacgccccgcccgtggcaccgaagcccgccgtggccgcgccggccgccaagccg
ggtgctcgtgaagagcgtgccgatggccgtggtccgcgtgaaggtggtcgcgaaggcggt
cgtgatggccgcagccgcggtggacgtggtggcgccgaaggccgtggtcagcgtgaaggt
ggtcgtgaaggcggccgtggtggccgtgacggcggccgcgaaggccgtccggtggaaggc
cgcgaaccgcgcgccgaaggccgtgtggaaggacgtccggaaggccgtgctgaaggccga
ggcgagggtcgcaggggcgaaggccgaggtgagccgcgtggcgaaggccgcaacgaagcg
cgtggcgagccccgcgctgaaggccgcggcgaaggccggggcgaaccgcgtggtgaaggc
cgtggcgaacggggtgaaggtcgccgaggcgatggtcgccgcgacaaccgccgcgacgcc
gcaccggtggacggcgcagcgccggccgaactggtgaacggcgcgccggtcaacgcaccg
ggcgaagcctccgaaggcggcgacaaccagcgccgtggtcgaggcggtcgcggtggcgag
aaccgccgccgcccggccgaaggcgccgaaggccaggccccggtgacgcagaacgatgca
gctcccgtggcgcaagacgcgggcgacaaccccgaagcagcccgggaaagcgagatgcct
gaaggcggcgacggcgcaccacgcgccccgcgcgaacgccgcagccgagaccgttatggc
cgcgaccgccgcgagcgcggcccgcgtgatgccaacggtgcccccgaaggcgccgagggt
gagacgcccgccgagatgcctgcgagcgaagtggcttttgccgccgcttcgacgccggtg
gtttcggcagagccgatggacgaagcccccacgcgcagctacttcagcctgccggtggat
gcagcgcccgcaccagtggtgaacgagccccccctggccgcgcctgcacccgttgcagcg
cctgtcgctgcgccggtgatggagcaggccgccccggcaccggtcatggcacccgccgtg
atggcagcggtcgcggctcctgtggccgcaccggcaccggtggcagcaccagcgccggct
gcgaagcccgccgcaccggtggtggcagaagcccccgcagcccgtggtctgcccaaggtg
ggcagcttcacgctgcccttggacgcgatgcagcaggttgcccaggccagcggtctggag
tgggtcaactccaacgccgacaaggtggcccaggtccaagccgcgatcgctgccgagccc
aagcccgtgcacgtgccgcgcgagcccaagccggcggtggtgctggacgacggcccgttg
gtgctggtggaaacgcgcaaggatctgcgcgacatgcagctgccgttcgaggcacgctga
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