Hydrogenophaga sp. RAC07: BSY239_773
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Entry
BSY239_773 CDS
T04455
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hyr
Hydrogenophaga sp. RAC07
Pathway
hyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSY239_773
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyr03019
]
BSY239_773
Enzymes [BR:
hyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BSY239_773
Messenger RNA biogenesis [BR:
hyr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSY239_773
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AOF87576
LinkDB
All DBs
Position
818745..820268
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AA seq
507 aa
AA seq
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MTQSFSELSLSPAIERAVAEMGYETMTPIQAQAIPVVLQGRDVMGAAQTGTGKTAAFTLP
LLQRMMKHENASTSPARHPVRALVLLPTRELADQVAEQVKLYAKYTNLRSMVVFGGMDMK
PQTAELKKGVEVLVATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSY
LPKQRTTLLFSATFSTEIKRLAGSYLQDPVTIEVARSNATASTVEQHFYSVGDDDKRGVL
KQILAERGLKQAFVFVNSKLGCARLARSLEREGLNTTALHGDKSQDERLKALEAFKSGAV
DLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFVSPRDARL
MGDLEKLLGKKLELEALELEADKRPAGRFNDGQRAWQAPEGDVRREPREGRPPRDREVRG
EGREEPRTASAGRPPARAPRAPADPLFDKPYEPSATGDTPPSWEASSRATARTVSPNIKS
RKKVPALFKSAPAPVVAEPVPAPVQQD
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgacccaatccttttccgaactgtccctctcccccgccattgagcgcgccgtggccgaa
atgggctacgagaccatgacgccgatccaggcgcaggcgattcccgtggtgctgcaaggc
cgtgacgtgatgggcgccgcccagaccggcaccggcaaaaccgccgctttcacgctgccc
ttgctgcagcgaatgatgaagcacgaaaacgcgtcgacctcgcccgcgcgccatcccgtg
cgcgccctggtgctgctgcccacgcgcgaactcgccgaccaggtggccgagcaggtcaag
ctctacgccaagtacaccaacctgcgcagcatggtggtgttcggcggcatggacatgaag
ccgcagacggccgaactgaaaaagggcgtcgaagtcctggtggccacgcccggccggttg
cttgatcacatcgaagccaaaaactgcgtgctcaaccaggtcgagtacgtggtgctggac
gaggccgaccgcatgctcgacatcggtttcctgcccgacctgcagcgcatcctgtcgtac
ctgcccaagcagcgcaccacgctgctgttctccgccaccttctccaccgagatcaaacgc
ctggccggcagctacctgcaggacccggtgacgatcgaagtcgcgcgctccaacgccacc
gcgtccaccgtggagcagcacttctacagcgtgggcgacgacgacaaacgcggcgtgctc
aaacagatcctcgccgagcgcggtctcaagcaggcgttcgtgttcgtgaacagcaagctc
ggctgcgcccggctggcgcgctcgctggagcgcgagggcctcaacaccaccgccttgcac
ggcgacaagagccaggacgaacgcctgaaagcgctggaagccttcaagagcggcgcggtc
gatctgctggtctgcaccgacgtggccgcgcgcggcctggacatcaaggacgtgccggcg
gtgttcaacttcgacatcccgttcaacgccgaagactatgtgcaccgcatcggccgtacc
ggccgtgccggcgcctccggtctggccgtgtccttcgtgagcccgcgtgatgcgcgcctc
atgggtgacctggaaaaactgctgggcaagaagctcgaactcgaagcgctcgaactcgaa
gcggacaagcgcccggccggccgcttcaacgatggccagcgcgcctggcaggcgcccgag
ggcgacgtgcgccgcgaaccccgcgagggccgcccaccgcgcgaccgcgaagtgcgcggc
gaaggtcgcgaggagccacgcacggcttcagcgggccgtccgcctgcgcgtgccccgcgc
gcgccggcagatccgttgttcgacaaaccctacgagcccagcgccacgggtgacacgccg
ccctcgtgggaagcgtcgtcccgtgccaccgcgcgcaccgtgtcgcccaacatcaagtcg
cgcaaaaaggtgcccgcgctgttcaagagcgcgcccgcacctgtggtcgcagagcctgtt
ccagcgccggtgcagcaggactga
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