Hydrogenophaga sp. RAC07: BSY239_972
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Entry
BSY239_972 CDS
T04455
Name
(GenBank) type III restriction enzyme, res subunit
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
hyr
Hydrogenophaga sp. RAC07
Brite
KEGG Orthology (KO) [BR:
hyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hyr03009
]
BSY239_972
03012 Translation factors [BR:
hyr03012
]
BSY239_972
Enzymes [BR:
hyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
BSY239_972
5.6.2.5 RNA 5'-3' helicase
BSY239_972
Ribosome biogenesis [BR:
hyr03009
]
Eukaryotic type
Other ribosome biogenesis factors
BSY239_972
Translation factors [BR:
hyr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
BSY239_972
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_30
AAA_19
Viral_helicase1
ResIII
AAA_22
nSTAND_NTPase5
AAA_16
NAT10_TcmA_helicase
SLFN-g3_helicase
DEAD
UvrD-helicase
nSTAND3
T2SSE
Flavi_DEAD
HEM4
NPHP3_N
AAA
AAA_25
PhoH
UvrD_C_2
DAP3
AAA_14
Herpes_ori_bp
AAA_28
AAA_5
IstB_IS21
RuvB_N
Fasciclin
AAA_18
cobW
Motif
Other DBs
NCBI-ProteinID:
AOF86883
LinkDB
All DBs
Position
complement(1041014..1042945)
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AA seq
643 aa
AA seq
DB search
MQLEQKEDQAQFALKNAKAGIPERQRRGLTWYPVTITAEDIGFGGKVVLELERPANQQGL
HLFQVGKNASLFGKVHGHSAVDQPTLNGVITSVRRNKLLLTTNKDELPDWVLDGGKLGID
LTFDEVSYREMNQAMLEVVRARGDRLAELRDVLLGARQARFCAPQADDLFYPNSLNDSQL
AAVRHVVTAQDVAIIHGPPGTGKTTTLVQAIRETFRRERRVLVCAPSNTAVDLLTEKLAE
RGVNVIRMGNPSRVSDLLLDHTLDARVMAHPSHSKMRAMRQTADQYRQTASEYVRHFGHE
ERQQRQMLKDEARQLFLQADDLERFITDDVLDSVQVITCTLVGASNRNLRHLSFDTVFID
EAAQALEPGCWIPIAKGQRVVLAGDHHQLPPTVKSDKAAREGLRETLFEKCIQRQPATAR
MLTLQYRMHEQIMAFSSQRFYGGQLQAHQSVRHAGLEAYDPGFAPDLPVEFLDTAGFGFV
EVTIPESRSTANPEEADLLLRRLTQLLECCDPGQHEHDPLTIGVIAPYRAQINCLKDAIE
ENEVLNGLLQHRLLSVGTVDAFQGQERDIIAISLTRSNHLGDIGFLSDIRRMNVGMTRAR
RKLLLVGDSSTLGAHAFFKDLLAHVERIGGYRTAWEMSDLKDA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcagcttgagcaaaaggaagaccaggcgcaatttgcactcaaaaatgccaaggccggc
atcccggagcgccagcggcgcggcttgacctggtatcccgtcaccatcaccgcggaagac
atcggctttggtggcaaggtggtgctggaactggaacgacccgccaaccagcaaggcctg
cacctgtttcaggtgggcaaaaacgcttcgctatttggcaaggtgcacgggcattcggcg
gttgaccagcccacgctcaatggcgtcatcaccagcgtgcggcgcaacaagctgctgctg
accaccaacaaggatgagctgcccgactgggtgctcgacggcggcaagctgggcattgac
ctcaccttcgacgaggtgagctaccgcgagatgaaccaggccatgctcgaggtggtgcgc
gcccggggtgaccggctggccgagctgcgcgacgtgctgctgggcgcacggcaggcccgc
ttttgcgcgccccaggccgacgacctgttctaccccaactccctcaacgactcgcagctg
gcggcggtgcgccacgtggtcacggcccaggacgtggctatcatccacggcccacccggc
accggcaaaaccacgacgctggtgcaggccattcgcgagaccttccggcgcgaacggcgt
gtgctggtgtgcgcgccttccaacacggcggtggacctgctcaccgaaaagctggccgag
cggggcgtgaacgtcattcgcatgggcaaccccagccgcgtgtcagacctgctgctggat
cacacgctcgacgctcgggtgatggcccatccgagccacagcaagatgcgggcgatgcgc
cagacggctgaccagtaccgccagaccgccagcgagtacgtccgccattttggtcatgag
gaacggcagcagcggcagatgctgaaggacgaagcgcggcagctgttcctgcaggcggac
gatctggagcgattcatcaccgacgatgtgctcgactcggtgcaggtcatcacctgcacg
ctggtgggcgccagcaaccgcaacctgcgccacctgagctttgacaccgttttcatcgac
gaagccgcccaggccctggagccgggctgctggattccgattgccaaaggccagcgtgtg
gttctcgctggcgatcaccaccagctcccgcccaccgtgaaaagcgacaaggctgcccgc
gaaggcctgcgcgaaaccttgtttgaaaagtgcatccagcgccagccggccacggcccgg
atgctcaccttgcagtaccgcatgcacgagcagattatggcgttcagctcccagcggttc
tatggcggccagctgcaggcgcaccagagcgtgcgccacgctggcctggaggcctacgac
ccgggcttcgcacccgacctgcctgtggaattcctcgacacggccggctttgggttcgtt
gaggtcaccattcccgaaagccgctccacggccaacccggaagaagcggacctgctgctc
aggcgcctcacccaactcctggagtgctgcgacccaggccagcacgagcatgacccactc
accattggcgtcatagcgccctaccgcgcccagatcaactgtttgaaggacgccattgag
gagaacgaagtgctcaacggcttgttgcagcaccgcctgctcagcgtgggcacggtcgat
gcgttccagggccaggagcgagacatcattgccatctcactcacgcgcagcaaccacctg
ggtgacatcggcttcctctcggacatccgccgcatgaacgtgggcatgacccgcgcccgc
cgcaagctgctgctcgtcggcgactcgtccaccctcggcgcccatgcgtttttcaaggac
ttgctggcccatgtggagcgcatcggtggctaccgcaccgcttgggaaatgtctgatttg
aaggacgcatga
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