Hydrogenobaculum sp. SN: HydSN_0412
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Entry
HydSN_0412 CDS
T02516
Name
(GenBank) CRISPR-associated protein Cas4
KO
K07464
CRISPR-associated exonuclease Cas4 [EC:
3.1.12.1
]
Organism
hys
Hydrogenobaculum sp. SN
Brite
KEGG Orthology (KO) [BR:
hys00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02048 Prokaryotic defense system [BR:
hys02048
]
HydSN_0412
Enzymes [BR:
hys01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.12 Exodeoxyribonucleases producing 3'-phosphomonoesters
3.1.12.1 5' to 3' exodeoxyribonuclease (nucleoside 3'-phosphate-forming)
HydSN_0412
Prokaryotic defense system [BR:
hys02048
]
CRISPR-Cas system
Type I CRISPR-Cas system
Subtype I-A factors
HydSN_0412
Subtype I-B factors
HydSN_0412
Subtype I-C factors
HydSN_0412
Subtype I-D factors
HydSN_0412
Type II CRISPR-Cas system
Subtype II-B factors
HydSN_0412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cas_Cas4
PDDEXK_1
PDDEXK_3
DUF2147
Motif
Other DBs
NCBI-ProteinID:
AGH93033
LinkDB
All DBs
Position
339164..339661
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AA seq
165 aa
AA seq
DB search
MDFDRINGTLMWYSYICDRQVWFIGHSIEPPQENEYLGKGRAIHEIFYQNSAKELFVDNT
IMIDVVRGKELIAELKSSSKHLRSAMMQMAFYLYYLKKEKGKMFSGKVLVPTEKKSYDVK
LTDDIEKEIEDKIRHINEILALDKPPAFVKIPFCKNCAYKELCFA
NT seq
498 nt
NT seq
+upstream
nt +downstream
nt
atggattttgataggataaatggaacccttatgtggtatagttacatatgcgatagacaa
gtgtggtttatagggcactctatagagccacctcaagaaaatgaatatcttggtaaaggg
agagccattcatgagatattttatcaaaacagcgccaaagaactttttgtggataatact
attatgatagatgttgtaagaggaaaagagcttatagcggagttaaaatctagctcaaaa
catcttcgcagtgctatgatgcaaatggctttttatctttattatctaaagaaagaaaag
ggtaaaatgttttctgggaaggtccttgtccccacagagaaaaaatcttacgatgtgaag
cttaccgatgatatagaaaaggagattgaggataagataagacatataaatgagattttg
gcacttgataaaccgccagcgtttgttaaaatacccttttgtaaaaattgtgcttataaa
gaactgtgctttgcttag
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