Hydrogenobaculum sp. SN: HydSN_0416
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Entry
HydSN_0416 CDS
T02516
Name
(GenBank) exonuclease, DNA polymerase III, epsilon subunit family
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
hys
Hydrogenobaculum sp. SN
Pathway
hys03030
DNA replication
hys03430
Mismatch repair
hys03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HydSN_0416
03430 Mismatch repair
HydSN_0416
03440 Homologous recombination
HydSN_0416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hys03032
]
HydSN_0416
03400 DNA repair and recombination proteins [BR:
hys03400
]
HydSN_0416
Enzymes [BR:
hys01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HydSN_0416
DNA replication proteins [BR:
hys03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HydSN_0416
DNA repair and recombination proteins [BR:
hys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HydSN_0416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DEDDh_C
RNase_H_2
DNA_pol_A_exo1
Rv2179c-like
DNApol_Exo
RH3_dom
Motif
Other DBs
NCBI-ProteinID:
AGH93037
LinkDB
All DBs
Position
complement(344745..345335)
Genome browser
AA seq
196 aa
AA seq
DB search
MYFSESFENDAYVVLDIETTGLNPDEHEIIEIFAFLVEKERITKQFHRLINPGFFIPRRI
TEITGITNAMLVGQPKVEEVIYDFDNFVKDYIIVGHNVKFDLSFLNKAYSIYLHKKLQSP
NICTLELSKKLIPNLKSYKLSAVADYFNIKYERLHRAKDDALLTYNIFNKLMDIIRRQYK
KELSYFYLKSLINSRI
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
atgtattttagcgaatcttttgagaatgacgcatacgtagttttagacatagaaaccacc
ggccttaatccagatgagcatgaaataatagagatttttgcctttttggtggaaaaagaa
agaatcacaaaacaatttcacagactcataaacccaggtttttttattccaagaaggata
acagaaataacaggcataacaaacgctatgctggtaggccaacccaaggttgaagaggtt
atatacgattttgacaactttgtaaaagactatatcatagtaggtcacaacgtaaaattt
gatttatcgtttttaaacaaagcttacagcatatatcttcataaaaaactacaatctcca
aatatctgcacccttgaactttccaaaaaactcatccctaacctaaaatcctacaaactt
tctgcagtagcagattactttaacataaaatacgaaagacttcacagagctaaagacgat
gctcttctaacttacaatatattcaataagttaatggatataataaggcgtcaatacaaa
aaagaattaagctatttttatcttaaaagcctcataaactcaaggatatag
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