Hydrogenobaculum sp. SN: HydSN_0695
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Entry
HydSN_0695 CDS
T02516
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hys
Hydrogenobaculum sp. SN
Pathway
hys03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hys00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HydSN_0695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hys03021
]
HydSN_0695
03019 Messenger RNA biogenesis [BR:
hys03019
]
HydSN_0695
Transcription machinery [BR:
hys03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HydSN_0695
Messenger RNA biogenesis [BR:
hys03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HydSN_0695
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
AAA_22
DUF7440
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
AGH93304
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All DBs
Position
complement(612214..613533)
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AA seq
439 aa
AA seq
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MEQDITTKETNKELSLEELKKMTMSELQKLGKEFDLKRITGIRKEELIENILEAYGKTKG
LRFVRGVLEVLQDGYGFLRSPNNNYMPNPDDIYVSPSQIKKLYLRTGDTIIGFSRPPKDN
EKYYALIKIESVNGLPIGSLELRSRPSFDKLVPYHPTERLNIEYDPSDYATRVLSLVSPI
GKGQRGLIVAPPKAGKTVILQRLSKAILTNHPEVYLIILLIDERPEEVTEMRRIVMSNAD
NADHEPEVIASTFDEPPERHMQVAELVIEKAKRLVELGNDVVILLDSMTRFARASNAVTP
PTGRVLSGGIEATALQRPKKFFGAARNIEDGGSLTIIATALIETGSRMDDVIYEEFKGTG
NMEVHLDRRLTEKRIFPAINISKSGTRKEELLLSDWELQRIWVLRKFFSSMDDVEAMEFL
LDKLKKFKTNQEFLKAMNA
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggaacaagacattacgactaaagaaaccaacaaagagctatcgctagaggaacttaaa
aaaatgacaatgtccgagttacaaaaactcggtaaagagtttgatttaaaaaggatcact
ggtataagaaaagaagagcttatagaaaatattcttgaagcttacggtaaaacaaagggt
ctaaggtttgtaagaggagtactagaagttttgcaagacgggtatgggtttttaagaagt
ccaaacaacaactatatgcccaatccagacgatatatacgtatctccgtctcagataaaa
aaactctatttaaggaccggtgataccataataggtttttcaagacccccaaaggacaac
gaaaaatattacgctcttataaagatagaatcagtaaacggattgcctataggttcgttg
gaactaaggagtaggccatcttttgataagctggtgccgtaccatcctacggagcgcctt
aatatagaatacgatccatcggactatgctacaagggtacttagtttggttagccctatt
ggtaaaggtcaaagggggcttattgtagcaccgccaaaagctggtaaaactgtcattctt
caacgcctgtcaaaggctatccttaccaatcatccagaagtatacttaattattttgtta
atagatgaaagaccggaagaagttactgagatgaggcgtatagtgatgtcaaatgcagac
aatgccgatcatgaaccagaggttatagcttctacctttgatgaaccaccagaaagacat
atgcaagtagctgagcttgttatagaaaaagccaaaagactcgtggagcttggaaatgac
gtggtaatacttcttgattctatgacaaggtttgcaagagcttctaatgctgtaacacca
ccaacaggtagggtgctttcaggtggtatagaagctacagctttacaaagacccaagaaa
ttctttggagccgctagaaatatagaagatggcggaagtctaaccatcatagctacagcg
ctaatagaaactggttctcgtatggacgatgttatatatgaagagtttaaaggcactggt
aatatggaagtacaccttgatagaaggctaacagagaaacgtatattcccagctataaac
ataagtaaatccggtaccagaaaagaggagctacttttgtcagattgggagttgcagcgt
atatgggttcttaggaaatttttctcttctatggatgatgtagaagcgatggagttttta
cttgataagctcaaaaagtttaaaacgaatcaagagtttttgaaagcgatgaacgcttaa
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