Hydrogenobaculum sp. SN: HydSN_1476
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Entry
HydSN_1476 CDS
T02516
Name
(GenBank) DNA/RNA helicase, superfamily I
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hys
Hydrogenobaculum sp. SN
Pathway
hys03420
Nucleotide excision repair
hys03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HydSN_1476
03430 Mismatch repair
HydSN_1476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hys03400
]
HydSN_1476
Enzymes [BR:
hys01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HydSN_1476
DNA repair and recombination proteins [BR:
hys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HydSN_1476
MMR (mismatch excision repair)
Other MMR factors
HydSN_1476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C
UvrD-helicase
AAA_19
UvrD_C_2
Viral_helicase1
AAA_11
DEAD
AAA_12
AAA_30
ResIII
LRR_RI_capping
Motif
Other DBs
NCBI-ProteinID:
AGH94045
LinkDB
All DBs
Position
1366086..1368233
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AA seq
715 aa
AA seq
DB search
MSETLLKELLEGLNEEQKKVVLSNGKPLLVVAGAGSGKTKTIIHKALYLIFNQEYKIRGS
RLLMITFTNKAANEIKERIQKYANLLGKDINIEWVGTFHSVASRIIRKHHAIFGLSNDFR
VLDEEDSVRLFKSIIKDQDIKKDEAKKLYIAVNQAIEGIRFLDEDNKFDRKVLELKDIFL
NAMIETSAVTFSYLMGAFKDMLQKDGAFRNYYQNFFDYIIVDEFQDTNTTQYEIIKHISK
KDNICVIGDPNQCIYEWRMAHPDNIISFIEDYNPEIIKLNINYRSSSEILSLANDVLKNS
KAKWKELVPILKSHKKDNQTHPKPVITFHPNEEKEAEWIAKKIEELSKSVPLEEIAILVR
VSYITNFLEQALVKAKIPHKIIGALRFFQRKEIKDILSYLHLAINPKDSLSFQRAITNPK
RGIGEKTIEKIINLSKQKSIDLIQATKYVLGNKLFEENDFIKAMERLVYNLEKGQANGRN
ISFYVEKLIKDIKYFEYLEQEYKEDYQERIDNVKELLRFFEIEAQKHQENQKENLKELLQ
EISLMEEDDKDNSKAVKIMTIHKAKGLEFEAVFMPRLENGILPHSSAFSDVLDMEEERRL
LYVGITRAKRYLFLSYTAAGKASDFINIMDKTLLDTSFLPKETLKNQEAKTLTKYESISY
KSSKNKVSKVDIKIGDSVFHEVFGEGVVLNISNGVANVKFKDKERSIVKEFLRPV
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaacactcttaaaagaacttttagaaggactaaatgaagagcaaaaaaaagtg
gttttatcaaatggaaaaccacttttggtggtggctggagctggttctggtaagactaaa
accataatacacaaagccctttatcttatatttaaccaagagtataagataagagggagt
aggcttttgatgataacctttaccaacaaagctgccaacgagataaaagaaaggatacaa
aaatacgctaacttattgggtaaagatataaatatagaatgggtgggtacatttcattct
gtggcttcaaggattataagaaagcatcatgcaatatttgggctttcaaacgattttaga
gtgcttgatgaagaagattcagtaaggcttttcaagagcataataaaagatcaagatata
aaaaaagatgaagcaaaaaagctttacatagctgtaaaccaagctatagaaggcataaga
tttttagacgaagacaacaagtttgatagaaaagtgctagagcttaaggatatattttta
aacgctatgatagagacaagcgctgttacattttcatatcttatgggagcttttaaggat
atgcttcaaaaagatggggcttttagaaactactatcagaatttttttgattatatcata
gtggatgagttccaagacaccaacaccactcagtacgagataataaaacatatatcaaaa
aaagacaacatatgcgtgataggagacccaaaccaatgcatttacgaatggcgtatggcc
cacccagacaacataataagctttatagaagattacaacccagaaataataaaattaaac
atcaactatagatcctcaagcgagatattatctttagccaatgatgttttaaaaaattca
aaagccaaatggaaagagcttgtacctattttaaaaagtcataaaaaagacaatcaaacc
catccaaaacctgttataacgtttcatccaaacgaagaaaaagaagcagagtggatagcc
aagaaaatagaggaacttagcaaaagcgtaccattggaagaaatagctatccttgtgagg
gtaagctatataacaaactttttagagcaagctcttgtaaaagcaaagatccctcataag
ataataggtgctttgagattttttcaaagaaaagagataaaagatatactatcgtacttg
catcttgcgataaatccaaaagatagcttatcttttcaaagagctataacaaatccaaaa
agaggcataggagaaaaaacaatagagaaaattataaacctctctaagcaaaaatctata
gatctgatccaagctacaaagtatgttttaggtaataagctttttgaagaaaacgacttt
ataaaggctatggaaagattggtttataacttggaaaaggggcaagccaacggcagaaat
atatctttttacgtggagaagcttataaaggatataaaatattttgaatatttggagcaa
gagtacaaagaagattatcaagagcgcatcgataacgtaaaggagcttttaagatttttt
gaaatagaagcccaaaaacatcaagaaaatcaaaaagaaaatttaaaagagcttttacaa
gagatttctttaatggaagaagatgacaaagacaactcaaaagccgttaaaattatgacc
attcacaaggcaaaaggtttggagtttgaagctgtttttatgccaaggcttgaaaatggt
atacttcctcattcttcagcttttagcgatgtgcttgatatggaagaagaaagaaggctt
ttatacgttggtattacaagggcaaaaagatatttgtttttaagttatactgctgctggt
aaagctagcgattttataaacattatggacaaaaccttgctggacacatcgtttttgcct
aaagaaacactgaaaaatcaagaggcaaaaactctaacaaaatatgaatctatatcttat
aaaagctcaaaaaataaagtatcaaaagtagatataaaaattggggatagcgtatttcac
gaggttttcggagagggcgtagttttaaatatatcaaacggcgtagcaaatgtgaagttt
aaagataaagaaagatcaattgtaaaagaattcttaagaccagtatga
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