Hydrogenobaculum sp. SN: HydSN_1633
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Entry
HydSN_1633 CDS
T02516
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hys
Hydrogenobaculum sp. SN
Pathway
hys03030
DNA replication
hys03430
Mismatch repair
hys03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HydSN_1633
03430 Mismatch repair
HydSN_1633
03440 Homologous recombination
HydSN_1633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hys03032
]
HydSN_1633
03400 DNA repair and recombination proteins [BR:
hys03400
]
HydSN_1633
Enzymes [BR:
hys01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HydSN_1633
DNA replication proteins [BR:
hys03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HydSN_1633
DNA repair and recombination proteins [BR:
hys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HydSN_1633
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
GeBP-like_DBD
Phage_phiTE_072
POT1
NTF2_3
DUF6282
Motif
Other DBs
NCBI-ProteinID:
AGH94191
LinkDB
All DBs
Position
1521183..1524788
Genome browser
AA seq
1201 aa
AA seq
DB search
MKDFVHLHLHTQYSLLDGAIKIKDLAKKAKEYGYKAVAITDHGNLFGTMSFYKEMKANGI
KPIIGMEAYFTTGKRTEHKGKGSEDNITDRINHHIILLAKNDTGLKNLMKLSSIAFIEGF
YYKPRIDYEVLEQHAEGLIALTACLKGVPTFYAAQGNEEMAYNWVKKFKDIFGDDLYLEL
QSNHIPAQETANKTLIEIAKKYNVKFAATNDCHYLLEEDLRAHNVLMAIQMKKTLQELGE
DAFGHYEGMHFASYEEMVKKFEGKWSEWEKALLNTVEISEKIADSLSIFEDKSYKFPEFF
KGDNINVNISSYLRNLAVEGLKSRIQKSQISKNIPEKEYWDRLNYELEVIQNMGFDSYFL
IVSDFINWSKSNNIPVGPGRGSAAGSLVAFALNITDVDPLKHGLIFERFLNPERISMPDI
DVDFCMDNRDKVIEYVKEKYGKDSVAQIITYNTMKAKQTLRDVARAMGMAYKDADVLAKL
IPQGNVQGTWLSLEEMYITPIEELMERYGHRGDIEDNVKKFRDLAKKDPQIKELVEISIK
LEGLTRHTSLHAAGIVIAPKPLIELAPLYLDKSVKDDTGNIATQYDMAHLEELGLVKMDF
LGLKTLTELWKMKELVKQNKGIDIDFLSLDFNNKEIYEFLATGETIGVFQLESKGMRELI
KRLKPDRFEDIVAALALYRPGPIKSGMVDKFINRKLGKEKVVYEFEELEEVLKETYGLIV
YQEQIMFISNILAGFTMGEADNLRKAIGKKKADLMAKIKDDFIRRSCERGYPKDKIEKLW
SEIEEFASYSFNKSHSVAYGYISFWTAYMKLYYPDEFYTVKFSTENSDKKFINLLKDAKS
FGIKVLPPDVNKSDVDFKIEAPRQIRFGLGRIKGVGEDTARHIKSMQEKIGRDFLSFQDF
TKNTDNRKVNKKVLEALSKAGAFDSLIEKSGYKNREDFLSRLLNSQDISSIAQRSLFGIK
ASKSTEQMEQSSSIDILKLEKEVLGFYISGHPLDKYNWILSHNKDITNIEDIDFENMPNQ
AIDSEAGQNASAEYTIAGVISDLQIKKTKNGSYMAIFNLVDKTDIVEVVVFPDRYTSSEG
IIKEDEVVVIKGILDIDIENENLKIVANDLYSIDSLLNQYNTLTLKIDEEKAKNGFLEKL
KSMLDKYTPKANEDVMKSQKVVLELDVSSYRAIVQTSKDVVLSKTLIEELSKYGIEFSLA
S
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgaaagattttgtgcatcttcatcttcatacccaatattcacttttggacggagctata
aagataaaggatctggctaaaaaggcaaaggaatacggctataaggctgtggctataacg
gatcatggtaacctttttggtactatgagcttttacaaagagatgaaggcaaacggtata
aagcccattataggcatggaagcttactttaccacaggaaaaagaactgagcataaagga
aaaggttctgaagataacataacagatagaataaaccaccacatcatacttttggcaaaa
aacgacactgggcttaaaaacctcatgaagctttcttctatagcttttattgaaggcttt
tactataaaccaaggatagattatgaagtgttagagcagcatgcggaaggtctaatagct
ttgacggcctgtcttaagggagtgcccactttttacgcagctcaaggcaacgaagagatg
gcttataattgggttaaaaagtttaaagatatctttggggatgatctttatttagagctt
caatcaaatcatataccagctcaggaaaccgccaataaaacccttatagagatagctaaa
aaatacaacgtaaagtttgctgccaccaacgattgtcattaccttttggaagaggatttg
agggctcacaacgtcttgatggcgattcagatgaaaaaaacacttcaggagcttggagaa
gatgcttttggacactatgagggtatgcactttgcctcatacgaggagatggtaaagaaa
tttgaaggaaaatggagtgagtgggaaaaagcgcttttaaacaccgttgaaatatcagaa
aaaattgcagattctttaagcatctttgaagataaatcttacaagtttcctgagtttttt
aaaggtgataatataaatgtcaatatatcttcttaccttagaaatttagccgttgagggt
cttaaaagccgtatacaaaaatctcaaataagcaaaaatataccagaaaaagagtactgg
gacaggctaaattatgaattagaagtaatacaaaatatgggttttgatagttatttcttg
atagtatcggattttataaactggtcaaaatcaaacaacatacctgtgggtcctggaaga
ggttctgcggcggggtctttggtggcttttgctctaaacataacagatgttgatccgtta
aagcatggacttatcttcgaaagattcttgaatccagagcgtatatctatgccagatata
gatgtagacttttgcatggacaacagagataaggttatagagtatgtaaaagaaaaatac
ggcaaagactctgtggctcagatcattacttacaatacgatgaaagctaaacaaaccctt
agagatgtggcaagggccatgggtatggcttacaaagatgccgatgtactagcaaagctt
atacctcaaggcaacgtccaaggtacatggctaagccttgaagagatgtatataacgccc
atagaagagttgatggagcgttatggacacagaggagatattgaagataatgtaaaaaaa
tttagagaccttgcgaaaaaagatcctcagataaaagagcttgtggagatctctataaaa
cttgaaggtctcacaaggcatacatctttacacgctgctggtattgtgatagctccaaaa
ccccttatagagttggcacctctgtatcttgataaatcggtaaaagatgatactggcaac
atagctacccaatacgatatggctcatttggaagagcttgggcttgtcaagatggatttt
cttggattaaaaacgcttacagaactatggaagatgaaagagcttgtaaaacaaaacaaa
ggtatagatattgatttcttgtctttggattttaacaacaaagaaatttacgagttttta
gccaccggtgaaacgataggggtgtttcaactggaatcaaagggtatgagggagcttata
aaacgtttaaaaccagacagatttgaagatattgtagccgctttagccctttatagacca
ggtcctataaaaagcgggatggtggataaatttataaatagaaaacttggtaaagaaaaa
gttgtatacgaatttgaagagcttgaagaggtgctaaaagaaacctatggtcttatcgtt
tatcaagagcagatcatgtttatatcaaacatacttgctgggtttaccatgggagaggca
gataatttgagaaaggccataggtaaaaagaaagctgatctcatggcaaagataaaggat
gatttcataagaagaagctgtgaaagaggctatcctaaggataaaatagaaaaactttgg
tctgaaatagaggagtttgcctcttattctttcaacaaatctcactctgtggcttacggt
tatatatctttttggactgcttacatgaagctttattatccagatgagttttacactgtt
aaattctctacagagaactccgataaaaagtttataaaccttttaaaagatgcgaagtct
tttggtataaaagtattacctccagatgtaaacaaatcagatgtggattttaagatagaa
gctccaagacaaataaggtttggactcggaagaataaagggtgttggtgaggataccgca
aggcatataaaatctatgcaagaaaaaattggaagagactttctaagttttcaagatttt
accaaaaacacagacaataggaaagtaaacaaaaaagttttggaagctctttcaaaagca
ggggcttttgatagtcttatagaaaaaagcggttataaaaatagagaagattttctctca
aggcttttgaattctcaggatatatcaagcatagctcagaggtcgttgtttggtataaaa
gcctcgaaatccactgagcagatggaacaaagctcttctatagatatattaaaattagaa
aaggaggttcttgggttttatatatctgggcatccattggacaaatacaattggatttta
tctcacaacaaagacataacaaatatagaagatatagattttgaaaatatgccaaaccaa
gccatagacagcgaggctgggcaaaacgcatcggcggaatatacgattgctggtgttata
agcgatttacagattaaaaaaaccaaaaatggttcttacatggctatttttaaccttgtg
gataaaacggatattgttgaagttgtggttttcccagataggtatacatcttctgaaggt
attataaaagaagatgaagtggtggtgataaaaggtatcttagacatagatattgaaaac
gaaaaccttaagatagtggcaaacgatctttattctatagattctttgttaaatcaatac
aacacgctaactcttaagatagatgaggaaaaagcaaaaaacggctttttagaaaagctt
aaatctatgctagacaaatatacgcccaaggctaacgaagatgttatgaaatctcaaaaa
gttgtattggaactggacgttagctcctatagggctatagtacaaacctccaaggatgtg
gtactttcaaaaaccctcatagaagagctcagtaaatatggtatagaattttctttggca
tcttaa
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