Hyphobacterium sp. CCMP332: HXX25_04040
Help
Entry
HXX25_04040 CDS
T06775
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hyt
Hyphobacterium sp. CCMP332
Pathway
hyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HXX25_04040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyt03019
]
HXX25_04040
03009 Ribosome biogenesis [BR:
hyt03009
]
HXX25_04040
Enzymes [BR:
hyt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HXX25_04040
Messenger RNA biogenesis [BR:
hyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HXX25_04040
Ribosome biogenesis [BR:
hyt03009
]
Prokaryotic type
rRNA processing factors
HXX25_04040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF5351
Motif
Other DBs
NCBI-ProteinID:
QNL18585
UniProt:
A0A7G8ZIK0
LinkDB
All DBs
Position
complement(781884..784457)
Genome browser
AA seq
857 aa
AA seq
DB search
MSKKMLIDASHSEETRVAIVEGSRVEEFDFESAAKKPIRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFNEIHPDYYQIPHEDRLALQAEEEKAVEEAMAEADEADETEGEDGAEDDA
DVEVEAVARKRRNFFRKYKIQEVIKRRQVLLVQVAKEERGNKGAALTTYLSLAGRYCVLM
PNTPRGGGISRKIANGSDRKRLKEITNELDLPTGMGLIVRTAGASRTKAEIRRDHDYLRR
VWDDIRAKTLESVAPALVYEEGDLVRRAIRDMYDRDVEIVLVEGEEGYKDAKGFMKLLMP
SHASKVQQYKEPMPLFVRHHVEDQLESAYNAETQLKSGGYLVIHQTEALVAIDVNSGRST
KERNIEDTALKTNLEAADEAARQMRLRDLAGLVVIDFIDMEENRNIRAVEKRMKDAMKKD
RARLQMGRISQFGLMEISRQRRRTSILEGSTKTCPHCGGKGYQRTPSSSALVALRALEEE
GARKRAAKVRITLPTDVALYLLNEKRDHVLALEQRYDFRVLIGADPDLIPPDCNVEVIEA
RDRSDEPEVEAAPITQHTPVPVSEPEDTPVEDSGNEGDGRRRRGRRRRRTEDDGAASTEN
QAAAEADGEDSDDDGEARPAARPELDENGQPRKRRRRGRRGGRGRRRGRGNEQGDANTNQ
EGQPDSNEATDIAEAPAGMAVIDPAAEAVALPTEPAEADKPKRRTRRKKTDAPADAAAEA
PEADAGPKADAKPKRTRKPRKKPDAVAEGKATATDSAADETPADAGDEKPKPKRAPRKTA
AAKAKAETPADESAPEDKPKPRRAAKKPAAKAEPKAEAKADEMADSPAESAPAEKDAKDN
APKRSGWWQKGAKLFGG
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagaaaatgctgatcgatgcgagtcactcggaagagactcgcgtcgccatcgtc
gaagggtcccgcgtcgaggagtttgatttcgaatccgcggccaagaaacccatccgcgga
aacatctatctggcaaaagtcacgcgcgtagagccttctctgcaagcggcctttgtagaa
tatggcggaaatcgccacggcttcctcgccttcaacgaaatccatccggattattatcag
atccctcatgaggatcgcctcgccttgcaggcagaggaagaaaaagctgtcgaagaagcg
atggctgaggctgatgaggccgacgagacggaaggcgaagacggcgcggaagacgacgcc
gatgtcgaagtcgaggccgttgcccgcaaacgccggaatttcttccggaaatacaagatt
caggaagttatcaagcgccgccaggtgctgctggtccaggtcgccaaggaagagcgcggc
aataagggcgcagcgctgaccacctatctgtcgctcgccggccgttattgcgtgctgatg
ccgaacacacctcgcggtggcgggatttcccgcaagatcgccaatggcagtgatcgcaag
cgcctgaaggaaattaccaacgagctggacctaccgaccggtatgggcctgatcgtccgc
accgccggcgccagccgcaccaaggcggaaatccgccgtgaccacgattatctgcgccgc
gtctgggacgacatccgcgccaagacgctggaatcggtggcccctgcccttgtttacgag
gaaggtgacctcgttcgccgcgccatccgcgacatgtatgaccgtgatgtcgagatcgtg
ctggtcgagggcgaggaaggctataaggatgccaagggcttcatgaagctcctgatgccg
tcgcatgcttccaaggtccagcagtataaagaaccgatgccgctctttgtccggcatcat
gtcgaggaccagctggagtcggcgtataatgccgagacgcagctgaaatcgggtggctat
ctggtgatccaccagaccgaagccctggtggcgatcgatgtgaactccgggcgttccacc
aaggaacgcaatatcgaagacaccgccctgaagaccaatctggaagcggccgatgaggcc
gcgcgccagatgcgcctgcgcgatctggcaggtctggttgttatcgacttcatcgatatg
gaagaaaaccggaatatccgggctgtcgaaaagcgcatgaaagatgcgatgaagaaggac
cgggcccggctccagatgggccggatttcccagtttggcctgatggaaatttcccgtcag
cgccgccggacctccattctggaaggctcgaccaagacctgcccgcattgtggcggcaaa
ggctatcagcggacgccgtcctccagcgcactggtcgcgctccgcgcccttgaagaagaa
ggggcccgcaaacgcgccgccaaggtgcgtatcaccttgccgaccgatgtggcgctctat
ctgctgaacgaaaagcgcgatcatgttctggcgctcgaacagcgctatgatttccgcgtt
ctcatcggcgctgatccggacctcattccgcccgactgcaatgtcgaggtcattgaggca
cgcgatcgctctgatgaacccgaagttgaagcggctccgattacccagcatacgccggtc
cctgtttccgagccggaagacacgccggtcgaagacagcggcaatgagggcgatggccgc
cgtcgccgcggtcgccgccggcgccggacagaagatgatggagctgcctcgacggaaaat
caggcggctgctgaagcggatggcgaagacagcgatgatgatggcgaggccaggcccgcc
gcacgtcccgagcttgacgagaacggtcagccgcgcaagcgccgtcgccgtggccgccgg
ggtggacggggccggcgtcgcggtcgtggcaatgaacagggcgatgccaacaccaaccag
gaaggccaacccgactccaacgaggccacggatatcgccgaggcacccgcgggcatggcg
gtgatcgatccggccgccgaagcggtggccctgccaacggaacccgcggaagccgacaag
ccaaagcgccggacacgccgcaaaaagacggacgcgccggccgatgccgctgcggaagcc
cctgaggcggatgccggtccaaaagccgatgccaagccgaagcgcacgcgcaagccgcgc
aagaagccggacgccgttgccgagggcaaagcgaccgcaaccgattcggcggcagacgag
actccggctgacgccggagacgagaagcccaagcccaagcgtgcgccccggaaaaccgca
gccgcaaaagccaaggcggaaaccccggcggacgagtcagcgcccgaggacaagccaaag
ccgcgccgtgcggccaaaaagcccgccgccaaggccgaaccgaaagccgaggccaaggct
gatgaaatggccgattctcccgccgagtcggcacctgccgaaaaggacgcaaaggacaat
gcacccaagcgttcaggctggtggcagaagggtgccaagctctttggcggctga
DBGET
integrated database retrieval system
