Hyphobacterium sp. CCMP332: HXX25_10435
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Entry
HXX25_10435 CDS
T06775
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hyt
Hyphobacterium sp. CCMP332
Pathway
hyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HXX25_10435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyt03019
]
HXX25_10435
Enzymes [BR:
hyt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HXX25_10435
Messenger RNA biogenesis [BR:
hyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HXX25_10435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_30
AAA_19
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QNL20355
UniProt:
A0A7G8ZNM0
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All DBs
Position
2084949..2086385
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AA seq
478 aa
AA seq
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MTQFTDFGLAEPILKALLSEGYTTPTPIQAEAIPALMAGRDLLGTAQTGTGKTAAFTLPI
LDAIAKSKGRAQGKSCTALILAPTRELALQIAESVKTYGRNTRPNVAVVMGGVKPGAQIR
AMRPGVDVLIATPGRLLDHMQTGAINLGSVKTVILDEADQMMDLGFMPAIRRILAATPSN
RQTALLSATMPKPIRALAHDFLTNPVQISVAPVARPIEQITQSVQFLDRAQKLERLVRVL
SVPEMTSGIVFTRTKRGADRVAQRLVKANLAADAIHGNKSQNQRQRALDAFKKGKVNILV
ATDIAARGIDIDGVSHVVNFELPNVPESYVHRIGRTARAGNTGIAVAFCDDEEKPLLKDI
ERLIGYRLAVTNEDGVEQHPSKPFTEEARGPAPVKKPRPRGGRNRNRGPRPEGQAGERAQ
SPRPQGQRPERAKSATGPGNDNAAPNRFGKSKFKPAQGGSKSASPGRPRAGGPNRRSA
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
ttgacccagtttaccgatttcggccttgccgaaccgatcctcaaagccctcctgtcggaa
ggctataccacccccaccccgatccaggccgaagccattccggctttgatggccggacgc
gaccttctgggcaccgcccagaccggcaccggcaagaccgccgccttcaccctgcccatt
ctcgatgcgattgcgaaatcgaagggccgcgcgcaaggcaagtcctgcaccgccctgatc
ctcgcaccgacgcgcgaactcgccttgcagatcgctgaatccgtcaagacctatggccgt
aatacgcgcccgaatgtggcggttgtcatgggcggcgtgaaacccggtgcccagatccgt
gccatgcgccccggtgtggatgttctgatcgccacgcccggccgtttgctcgaccacatg
cagaccggtgccatcaatcttggcagtgtgaaaaccgtcattctggatgaagctgaccag
atgatggatctcggcttcatgccggccatccgccgcattctggcggccacgccgtccaac
cgtcagacggcccttctgtccgccaccatgccgaagccgatccgggcccttgcccatgat
ttcctgaccaatccggttcagatttccgtcgcgcccgtcgcgcgtccgatcgaacagatc
acccagtcggttcaattcctcgaccgcgcccagaagctggaacgccttgtccgcgtgctc
agcgtgccggaaatgaccagcgggatcgtcttcacgcgcaccaagcgcggcgcagaccgt
gttgcccagcgtctggtgaaagccaacctcgcggcggatgctatccacggcaacaagagc
cagaaccagcgccagcgcgcgcttgatgccttcaagaagggcaaggtcaatattctggtg
gccaccgatattgccgcgcgcggcattgatatcgacggcgtatcgcatgtcgtgaatttc
gaactgccgaatgtgccggaatcctatgtccaccgtatcgggcggaccgcacgggccggt
aataccggcatcgccgtcgcattctgcgatgacgaggaaaagccgcttttgaaggatatc
gaacgcctcatcggctatcggcttgccgtcaccaatgaggacggtgttgaacaacacccc
tccaagcccttcaccgaagaagcccgcggtccggcaccggtcaagaaaccccgcccccgc
ggtggccggaaccgcaatcgcggtccgcgtcccgaaggtcaggcaggcgagcgcgcacaa
tctccccgtccgcaaggccaacgcccggagcgcgccaaaagcgccactggtccgggaaat
gacaatgcggcaccgaaccgtttcggaaagagcaagttcaaaccagcccagggtggcagc
aagtcggcatccccggggcgtccgcgcgccggtggcccgaaccgccgctcggcctga
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