Hyphobacterium sp. CCMP332: HXX25_11580
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Entry
HXX25_11580 CDS
T06775
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hyt
Hyphobacterium sp. CCMP332
Pathway
hyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HXX25_11580 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyt03021
]
HXX25_11580 (rho)
03019 Messenger RNA biogenesis [BR:
hyt03019
]
HXX25_11580 (rho)
Transcription machinery [BR:
hyt03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HXX25_11580 (rho)
Messenger RNA biogenesis [BR:
hyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HXX25_11580 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
S1CSD-TOTE-2
AAA_22
AAA_25
AAA
Motif
Other DBs
NCBI-ProteinID:
QNL19910
LinkDB
All DBs
Position
2301414..2302796
Genome browser
AA seq
460 aa
AA seq
DB search
MSDYNDDNETDDDDLDNENENDSDDLDNEPKQLPELLNGMTRMTLQELKEKKPTELLEIA
EALDIENAATMRKQGIMFAVLKEVAERGVEISGGGTLEILQDGFGFLRSPEANYLAGPDD
IYVSPNQIKKFGLRTGDTVEGEIRAPRRGERYFALLKISLINFVDPEAARHKIHFDNLTP
LYPEERFNLELPDPTKKDRTGRVIDIVAPIGKGQRALIVAPPRTGKTMILQNIAHAIETN
HPNCYLIVLLIDERPEEVTDMQRTVKGEVIASTFDEPATRHVQVADMVIEKAKRLVEHGR
DVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIENGGSLSIIAT
ALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRVFPAIDILKSGTRKEELLVDKVDLQ
KTYVLRRILNPMGAQDAIDFLLSKLKETKQNSEFFDSMNT
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgtctgactataatgatgacaatgaaactgacgacgacgatctcgacaatgagaacgaa
aacgactcagacgatctcgacaatgagcccaaacaattgccggaattgctcaacggcatg
acgcgcatgacccttcaggaactgaaggagaaaaagcccacggaattgctggaaatcgcc
gaggccctcgatatcgagaatgcggcgaccatgcgcaaacagggcatcatgtttgccgtt
ctcaaggaagttgccgaacgcggcgtcgagatttccggcggcgggacgctggagattctt
caggatggctttggtttcctgcggtctccggaagccaattatcttgcgggaccggatgat
atctacgtgtcgccgaaccagatcaagaagttcggtctgcgcacgggcgacaccgttgaa
ggcgaaattcgtgcgccgcggcgcggtgagcgctattttgccctgctgaagatcagcctg
atcaatttcgtcgatccggaagcggcccggcacaagattcatttcgacaatctgacgccg
ctctaccccgaagaacgttttaatctggagctgcccgatccgaccaaaaaggaccggacc
ggccgtgtgatcgatattgtggcgccgatcggcaagggccagcgcgcgctgatcgttgct
ccaccgcggaccggcaagaccatgatcttgcagaatattgcccatgccatcgagaccaat
caccccaattgctatctcattgtcctgttgattgacgagcgtcccgaagaggtgacggac
atgcagcgcacggtgaagggcgaggtgattgcctcgacctttgacgagccggccacccgc
cacgtccaggttgccgacatggtcatcgagaaggccaagcggctggtcgagcacggccgt
gacgtcgttatcctgctggattccatcacgcgtcttggccgcgcctacaacacagttgtg
ccctcttcgggcaaggtgttgaccggtggtgtggatgccaatgcgctgcaacgcccgaaa
cgtttcttcggcgcggcccggaatatcgagaatggtggatcgctctccattattgcgact
gctctgatcgataccggttcgcgtatggatgaagtgatcttcgaggagttcaagggtacg
ggtaactcggaaatcgtgctggatcggaaagtggccgacaagcgcgtcttcccggccatc
gatattctcaaatccggaacgcggaaagaagaactgctcgttgacaaggtcgatttgcag
aaaacctatgttctgcgccgcatcctcaacccgatgggtgcgcaggatgcgattgatttc
cttctgtccaagctcaaggaaacaaagcagaattccgaattcttcgattccatgaacact
tag
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