Hyphobacterium sp. CCMP332: HXX25_13020
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Entry
HXX25_13020 CDS
T06775
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hyt
Hyphobacterium sp. CCMP332
Pathway
hyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HXX25_13020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyt03019
]
HXX25_13020
03009 Ribosome biogenesis [BR:
hyt03009
]
HXX25_13020
Enzymes [BR:
hyt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HXX25_13020
Messenger RNA biogenesis [BR:
hyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HXX25_13020
Ribosome biogenesis [BR:
hyt03009
]
Prokaryotic type
rRNA helicases
HXX25_13020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QNL20168
LinkDB
All DBs
Position
complement(2608898..2611150)
Genome browser
AA seq
750 aa
AA seq
DB search
MTMNSRIAPALARALEGKGYTKMTEVQEAVLTDEAAGADLLVSAQTGSGKTVAFGLAIAP
TLLGDDDRFDHAAAPLALVVAPTRELALQVQRELLWLYGEAGARIVSCVGGMDARSERKA
LERGCHIVVGTPGRLRDHIERKSLDMSSLRAVVLDEADEMLDFGFREDLEFILEGAPDDR
RTLLFSATVPKSIADIARRYQTNAVRLSTVSERQQHADIEYRALSVAPADRENALINVLR
FYEAERAIVFCATREGVNRLSARLGNRGFAAVALSGELSQKERTHALQALRDGRARVCIA
TDVAARGLDLPGLELVVHSDLPTNSDVLKHRSGRTGRAGQQGVCVMIVPQNQRGRMNRLL
RGAHIEAEWGEAPSLNDIKAKDRERLLNDPSLHQDYDEEALSEARELLALHSPEKIAAAF
LHRMQSSTPSAEDLMVMPAAGERTKTARREPFVGGAWFKLTAGRNQRAEPRWLLPMICRM
GDVTRNEVGAIEIGDTETLFEIAADHAERFAAHVKASGGAEGSIYIHPANAPTNKPQNRV
REERPKRKFEPRTEARPEAMDRPARPAKRADDVERPARPAERPEPVARPARAVRPERTER
PERAERPQGARPAKARDDKPFRKPGAEEKRARPASPTAPRYNPDDGPPRRRDEQAEAGPA
EQRPRKAYGAKPKFRANPDKPKPPFAGKSHFRKADSPDARPAAGNAAPKPGGSPSKFKSK
GKPKLHRASYDDGQQSFKRVKRKGPKPGRS
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgaattcccgtatcgcgccggcattggcgcgcgctcttgaaggcaagggctat
accaaaatgaccgaagtccaggaggccgtcctcaccgacgaggccgctggcgccgacctt
cttgtttccgcccagaccggctccggaaaaaccgtggcgttcggccttgccattgcgccg
accctgcttggcgacgacgaccggtttgaccatgccgccgccccactggccctcgtggtc
gcgccgacgcgcgaactggcacttcaggttcagcgtgaattgctctggctctatggcgaa
gccggtgcgcgcatcgtgtcctgcgtgggcgggatggatgcccgctcggaacgcaaggcg
ctggaacgcggttgccacattgtcgttggcacacccggccgcttgcgcgatcacatcgaa
cgcaaatccctggacatgtcgtccttgcgcgccgtggtgctcgacgaagccgatgagatg
ctcgatttcggcttccgcgaagatctggaattcatcctcgaaggcgcgccggacgaccgt
cgcactctgctcttttccgcgaccgtgccgaaatccatcgccgatattgcgcggcgctat
cagaccaatgccgtccggctgtcgacggtcagcgagcgccagcagcacgccgatatcgaa
taccgcgcgctgagcgtggctccggcggatcgcgagaatgccctgatcaatgtgctgcgc
ttttatgaagccgaacgcgccatcgttttctgcgccacccgcgaaggtgtgaaccgcctg
tctgcccgacttggcaatcgcggttttgccgccgttgcgctgtccggtgagctgtcccag
aaagagcgcacccatgccctgcaagccctgcgcgatggccgcgcccgggtctgcattgca
acggatgtcgcggcgcgtggtctggacctgccggggctggagctggtggtccattccgat
ttgccaaccaatagcgatgtattgaaacaccgctccggccggacagggcgggcgggccag
caaggtgtctgcgtcatgattgttccgcaaaaccagcgcggccgcatgaaccgccttctg
cgcggcgcccatatcgaagcggaatggggcgaagcgcccagcctgaacgatatcaaggca
aaggatcgcgagcggttgctgaacgatccgagcctgcatcaggattatgatgaagaggcg
ctgagcgaggcacgcgaattgctggccctgcacagccccgagaaaatcgcggccgctttc
ctccaccggatgcaatcctcgacgccgtcggccgaagacctgatggtgatgcctgccgcc
ggcgaacgcaccaagaccgcccgccgcgagccctttgtgggcggtgcctggttcaaactg
acggccggacgcaatcagcgcgccgaaccgcgctggctcctgccgatgatttgccgcatg
ggcgatgtcacccgcaacgaggtcggcgccatcgagattggcgatactgaaaccctgttt
gaaattgccgccgatcatgccgagcgtttcgccgcgcatgtcaaagcctccggcggggca
gaaggctcgatctacattcatcccgccaatgcgccgaccaacaagccgcaaaaccgggtc
cgcgaagaacgcccgaagcggaaattcgagccccggaccgaggcgcgacccgaggcaatg
gaccgcccggctcgcccggcaaagcgggcagatgatgtcgagcgccccgcccgtccggcg
gaacggcctgaacccgtggcgcgtcccgctcgcgcagttcggccggaacgtacggaacgc
ccggagcgggcggaacgtccgcaaggcgcgcgcccggcaaaagcacgcgatgacaagcct
ttccgcaagccgggggctgaagagaaacgggccaggcccgcttcaccgaccgcgccgcgc
tataaccccgatgatggcccgccgcgccgccgcgacgaacaggccgaggccggtccggca
gagcaacggccccgcaaggcctatggcgccaagccaaaattccgcgcgaatccggacaag
ccgaaaccacctttcgccggaaaaagtcacttcagaaaagctgacagcccggacgcgcgt
ccggctgcgggaaatgccgcgcccaagccaggtggcagcccgtcaaaattcaaatccaag
ggcaagcccaaactacatcgcgccagctatgatgacgggcaacaatccttcaaacgggtg
aaacgcaaaggcccaaaacccggtcgctcgtag
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