Hymenobacter weizhouensis: OIS53_03360
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Entry
OIS53_03360 CDS
T11506
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hyu Hymenobacter weizhouensis
Pathway
hyu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OIS53_03360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyu03019
]
OIS53_03360
Enzymes [BR:
hyu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OIS53_03360
Messenger RNA biogenesis [BR:
hyu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OIS53_03360
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
AAA_30
Utp25_C
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UYZ63888
LinkDB
All DBs
Position
complement(838188..839627)
Genome browser
AA seq
479 aa
AA seq
DB search
MSFDELNLIDPILRALHEEGYTTPTPIQQQAIPQVLEGHDLLGVAQTGTGKTAAFTVPIL
QILHQTAQVERHAPGRTRCLILTPTRELAIQIGESFAAYGRHLPKLRHTVIFGGVGQTPQ
VQALKRGVEIIIATPGRLLDLMNQGFVDLRHIEIFVLDEADRMLDMGFIHDIKRLLPKLP
ASRQTLFFSATMPGQIQDLADTILKPNPVKVAVTPVSSTADTVTQAVYMVEKNDKPALLE
HVLSDRNIRRVLVFTRTKHGADKVVKTLAKANIPAEAIHGNKSQNHRQRALSNFKAGTTR
VLVATDIAARGIDVDELTHVINYEIPNEPETYVHRIGRTGRAGANGTALSFCDDEERAYL
QDIQKLIRRQVPVVQEHPFQSAEVAPVPLSGGPAIKRPKGPAGRPARPGRGPQPAGQPRS
EAGGRTQHQGRSGERPAGHGQRAAGSPPARSGGSPTARPSSGAGSNGQRRRFRGGGQGR
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcgacgaactcaatctgattgaccccatcctgcgtgccctgcacgaggaaggc
tacaccacccccactcctattcagcagcaagccattccgcaggtgctcgaaggtcacgac
ctgctgggcgtggcccagaccggcaccggcaaaacggccgccttcaccgtgcccatcctg
cagattctgcaccagacggcccaggtagagcgccacgcgcccggccgcacccgctgcctg
atactcacgcccacccgtgagctggccatccaaatcggggaaagcttcgcagcctacggc
cgccacctgcccaagctgcgccacaccgtcatcttcggcggcgtgggccaaacgccccag
gtgcaggcccttaagcgcggcgtggaaatcatcattgccacgcccggccgcctgctcgac
ctcatgaaccagggcttcgtagacctgcgccacatcgagatttttgtgctggatgaagca
gaccgcatgctcgacatgggcttcatccacgacatcaagcgcctgctgcccaagctgccg
gcctcgcgccagaccctgttcttctcggccaccatgcccggccagattcaggacctggcc
gacaccattctcaagcccaacccggtgaaagtggccgtcacgcccgtgtcgagcaccgcc
gacaccgtgacccaggccgtgtacatggtggagaaaaacgacaagcctgccctgctggag
cacgtgctgtccgacaggaacatccgccgggtactggtgtttacccgcaccaagcacggc
gccgacaaggtggtgaaaaccctggccaaagccaatattccggccgaagccatccacggc
aacaagtcgcagaaccaccgccagcgggccctgagcaacttcaaggccggcactacgcgg
gtgctcgtggccaccgacattgccgcccgcggcatcgacgtagacgagctgacccacgtc
atcaactacgaaatacccaacgagcccgaaacctacgtgcaccgcatcgggcgcaccggc
cgcgccggcgccaacggcaccgccctctccttctgcgacgacgaggaacgggcctacctc
caggatattcagaagctgattcggcgccaggtgcccgtagtgcaggagcatccgttccag
tcggctgaggtagcgccggtgcctttgtcgggcgggccggccatcaagcggcccaagggc
ccagccggtcggccggcccgccccggccgcggtccgcaacccgccggccagccccgcagc
gaagcgggcggccggacccagcaccagggccggagcggtgagcggccggccggccacggc
caacgggctgctggcagcccaccggcccgctccggcggcagccccaccgcccggcccagc
agcggcgcgggcagtaatggtcagcgccgccgcttccgcgggggcggccagggccgttag
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