Hymenobacter weizhouensis: OIS53_13765
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Entry
OIS53_13765 CDS
T11506
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
hyu Hymenobacter weizhouensis
Pathway
hyu02020
Two-component system
hyu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hyu00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
OIS53_13765 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OIS53_13765 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyu03021
]
OIS53_13765 (rpoN)
Transcription machinery [BR:
hyu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OIS53_13765 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
WHD_RNase_R
LacI
SF3b1
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
UYZ62068
LinkDB
All DBs
Position
3275381..3276949
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AA seq
522 aa
AA seq
DB search
MKQLLSQKLSPQQIQFIKLLQIPTAELEARIKEELEVNPALEEGDDHEEEFEEQDRDDSD
DSDEDFDNDPDAEFDNPDNTLDEDFDDRSEEQPEVELPTKEEPADSKDDSGDDLDLSDYL
NDDEIAGYKMQGDGPGEDEDDREMPLADTSGSLVDSLLDQLGFADLDEKQEAIGRQLIGS
IDNDGYIRRDLAAIANDLAFSQNIEATVPEIEAVLHVIQSFDPPGIGARDLQECLLLQLE
RRPQDEVTEYAERILNETFDEFTKKHYQRIQQKLDLEDDELKEAIALILKLNPKPGGTGP
VGMGKVQYIIPDFILTNENGQFNLTLNSRNAPDLRVSPAYTEMFRAYDKASKKDKKMKEA
VTFVKQKLDSAKWFIDAIRQRQNTLLRTMDAIVRYQREFFLDGDESKLRPMILKDIAQEI
GMDISTVSRVANSKSVQTEFGIYPLKYFFSEGIATDSGEDASSREVKHILKEIIDGENKA
KPLSDDKLEKMLNARGYNIARRTVAKYREQLNIPVARLRKEL
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagcttctctctcagaagctgtccccccaacaaatacaattcattaagctgctg
caaattccgacggcagagctggaagctcgtatcaaggaggagctggaggtaaacccggcc
ctggaggaaggcgacgaccacgaggaggaatttgaggagcaggaccgcgacgattcggac
gactcggatgaggacttcgacaacgaccccgacgccgagtttgacaacccggataacacc
ctggacgaggattttgacgaccgtagcgaagagcagcccgaagtagagctacccacgaaa
gaagaacccgccgactcgaaagacgacagtggcgacgacctcgacctgagcgactacctc
aacgacgatgaaatagccggctataaaatgcagggcgacggccccggtgaggacgaggac
gaccgggaaatgcccctggccgacaccagcggctccctggtggactccttgctcgatcag
ctgggctttgccgacctcgatgaaaagcaggaagccattggccgccagctcattggctcc
atcgacaacgacggctacatccgtcgcgacctggccgccattgccaacgacctggcgttt
tcacagaacatcgaggccaccgtgcccgagattgaagctgtgctgcacgtcattcagagc
ttcgacccgcccggcatcggggcccgcgacttgcaggagtgcctgctgctccagctggag
cgccgcccccaggacgaggtaaccgaatacgccgagcgtatcctgaacgagacgttcgat
gagtttaccaagaagcactaccagcgcattcagcagaagctggacctggaggacgacgag
ctgaaagaagccattgccctgattctcaagctcaaccccaagcccggcggcaccggcccg
gtgggcatgggcaaggtgcagtacatcattcccgacttcatcctcaccaacgagaacggg
cagttcaacctgaccctgaactcgcgcaacgcccccgacctgcgcgtgtcgccggcctac
accgagatgttccgggcctacgacaaggcctcgaagaaggacaagaagatgaaggaggcc
gtgaccttcgtgaagcagaagctggactcggccaagtggtttatcgacgccatccggcag
cgccagaacacgctgctgcgcaccatggacgccattgtgcgctaccagcgcgagtttttc
ctcgacggcgacgaaagcaagctgcggcccatgattctgaaggacatagcccaggaaatc
ggcatggacatcagcacggtgagccgggtggccaactccaaatcggtgcagaccgagttc
ggcatctacccgctcaagtacttcttctccgaaggcattgccaccgactcgggcgaggac
gccagctcccgcgaggtcaagcacattctcaaggaaatcatcgacggcgaaaacaaagcc
aagccgctgtcggatgacaagctggaaaagatgctcaacgcccgcggctacaacattgcc
cgccgcaccgtagccaagtaccgtgagcagctgaacattccggtagcccgcctgcggaag
gagttgtaa
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