Hymenobacter weizhouensis: OIS53_18025
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Entry
OIS53_18025 CDS
T11506
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hyu Hymenobacter weizhouensis
Pathway
hyu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hyu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OIS53_18025 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyu03021
]
OIS53_18025 (rpoC)
03400 DNA repair and recombination proteins [BR:
hyu03400
]
OIS53_18025 (rpoC)
Enzymes [BR:
hyu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OIS53_18025 (rpoC)
Transcription machinery [BR:
hyu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OIS53_18025 (rpoC)
DNA repair and recombination proteins [BR:
hyu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OIS53_18025 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
BSH_YknX
BSH_RND
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
UYZ62876
LinkDB
All DBs
Position
4335356..4339708
Genome browser
AA seq
1450 aa
AA seq
DB search
MAFAKNKKLVQDFSKVTISLASPESILERSNGEVVKPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFKSLPNKI
GYLLGLPTKKLDQIIYYERYVVVQPGLLAEEGVQQLDFLTEDEYLDIIDKLPRENQMLPN
EDPNKFIARMGADALQLLLERINLDELSYSLRDSAAHETSQQRKAEALKRLRVVEAFRDA
ATRIENKPEWMVIRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRAEGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKNMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDA
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPRLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGPAAILEASMLMLASHNILNPANGAPIAVPSQDMVLGLYYVTKGKRSTDDEKVL
GEGRMFYSDEEVVIAINEGQLSKHAYIKVRTQVRDENDELVTKIIETVAGRVLFNQLVPK
EVGFVDELLTKKKLQQIISLVFKRTGMARTAQFLDDIKTLGFQSAYKGGLSMGLGDINIP
AEKDKLIAQAQADVAAVTQNYQMGLITDNERYNQVIDIWTRINNQITETLMGRLEKENQG
FNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKSLQGSVGEIIENPILSNFKEGLDVIE
YFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNENDCGTLRGIETFALKDNEDV
VEPLAERILGRVAVHDIIDPLTDELILAAGSEITEDITRRIDNTAIESVEIRSVLTCESK
RGICAKCYGRNLSSGRMVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAVEASLK
AKFAGVIEFEDIRTVDTVNAEGEPVKVVMGRSGEIRIVEKGTGKVFISNHVPYGSFLLVD
EGQEVEKGQELNNWDPYNAVILAEFDGSVQYDAITEGITYREESDEQTGHREKVIIESKD
KTQNPAIIVRPGKKGDTEGQKAYSIPVGSHLNVENGEKIKAGHILAKIPRAVGKTRDITG
GLPRVTELFEARNPSNPAVVSEIDGVVTYGTVKRGNREIFVESKDGVKKKYMVPLSKHIL
VQDNDFIRAGMPLSDGAITPSDILSIQGPGAVQEYLVNEIQEVYRLQGVKINDKHIEVVV
RQMMQKVVILDAGDTSFLEHQVVDKISFMEENDTIIDMKVVTNAGDSTNLKPGQIVTARR
LRDENSSLRRRDLALVEVRDAQPAVSRPTLQGITQASLGTQSFISAASFQETTKVLSEAA
IRGKADELLGLKENVIVGHLIPAGTGLREYTRQVVGSKEEMEAAQATKTDDVAAPAKRPA
RASRRESVSE
NT seq
4353 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgcaaaaaacaagaaactggtacaggacttctcgaaagttaccatttcgctg
gcctcgcccgaatccatcctggagcggtcgaacggggaagtggtgaagcccgagacgatt
aactaccgtacatacaagcccgagatgggcggcctgttttgcgagcggatcttcggtccg
gtgaaggactgggaatgccactgcggcaaatacaagcgcatccgctataaaggcatcatc
tgcgaccggtgcggcgtggaggtgactgagaagaaagtgcgtcgggagcggatgggccac
atcgaactggtggtgcccgtggcgcacatctggtacttcaagtccctacccaataaaatc
ggctacctgctgggcctgcccaccaagaagctcgaccagattatctattacgagcggtac
gtagttgttcagcctggtctgctggctgaagaaggcgtgcagcagctcgatttcctgacc
gaagacgagtacctcgacatcatcgacaagctcccgcgggagaatcagatgctgccgaac
gaggaccccaacaagttcattgcccgcatgggcgccgacgcgctgcaactcctgctggag
cgcatcaacctcgacgagctgagctactcgctgcgtgactccgcggcccacgagacttcg
cagcagcgtaaagcggaggcgttgaagcgtctgcgtgtggtggaagccttccgcgacgcc
gctacccgcatcgagaacaagcccgagtggatggttatccgcatggtaccggtgattccg
ccggaactgcgtccccttgtgcccttggatggtggtcgtttcgctacctccgacctgaac
gacttgtaccgccgcgttatcatccgcaacaaccgcctcaagcgcctgattgaaatcaaa
gcgccggaggtgattctgcgcaacgaaaagcgcatgttgcaggaggctgtggattcgcta
ttcgacaactcgcgcaaggtgaatgccgtgcgcgccgaaggcaaccgggccctgaagtcg
ctgtccgatatgctgaaaggcaagcagggccgcttccgccagaacctgctcggtaagcgt
gtggactactcgggccgttcggttatcgtggtaggccccgagctgaagctgcatgagtgc
ggtctgcccaagaacatggccgccgagctgttcaagcccttcatcatccgcaagctcatt
gagcgcggcattgtgaagacggtgaagtcggccaagaagattgtggaccgcaaggacgcc
gtggtgtgggacatcctggagaacgtgctgaaaggccacccggtgctcctcaaccgtgcc
cctacgctacaccgcttgggcatccaggccttccagccccgcctcatcgagggtaaagct
attcagctgcacccgttggtgtgtaccgccttcaacgctgactttgacggtgaccagatg
gccgtgcacgttcctctggggccggctgctatcctggaagcctccatgctcatgctggct
tcgcacaacatcctgaaccccgccaacggcgcgcccattgcggtaccgtcgcaggacatg
gtgctcgggctgtactacgtgaccaagggcaagcgcagcaccgacgacgagaaagtgctc
ggcgaaggccgcatgttctactccgatgaggaagtagtcattgccatcaacgaaggccag
ctgtcaaagcacgcctatatcaaggtgcggacgcaggtgcgtgatgaaaacgatgagctg
gtaaccaaaatcatcgaaaccgtagccggccgcgtgctgttcaaccagcttgtgcccaag
gaagttggtttcgtggatgagctgctgactaagaaaaagctccagcaaatcatttcgctg
gtgtttaagcgcacgggtatggctcgcactgcccagttcctcgacgacattaagacgctg
ggcttccagtcggcgtacaaaggtggtttgtcgatgggcctaggtgacatcaacatcccg
gccgaaaaagacaagctcattgcccaagcgcaggccgacgtagctgccgtaacgcagaac
taccagatgggtctgattacggacaatgagcggtacaaccaggttatcgacatctggacg
cgcatcaacaaccaaatcactgaaaccctcatgggtcgcctcgaaaaggagaaccagggc
ttcaactcgatttacatgatgatgcactccggggcccgtggttcgcgggagcagattcgt
cagcttggcgggatgcggggtctgatggccaagccgcagaagtcgctgcaaggctcggta
ggtgagattattgaaaacccgatcttgtccaacttcaaagaaggtctggacgttatcgag
tacttcatctcgacccacggtgcccggaaaggtctggccgacaccgcattgaaaacggcc
gacgccggctacctgacccgccgtctggtggacgtgtcgcaggacgttatcgtaaacgaa
aacgactgtggtacgctgcggggcatcgaaaccttcgcgttgaaagacaacgaggacgtg
gtagagccactggccgagcgtattctgggtcgcgtagcggtgcacgatatcatcgacccg
ctgacggatgagctgattctggccgctggttcggaaatcactgaggacatcacccgccgc
atcgacaacacggccatcgagtcggtagaaatccgctcggtgctgacctgcgaatcgaag
cgcggcatttgcgccaagtgttacggccgcaacctgtcgtcgggccgcatggtgcagaag
ggcgaggctgtcggtgtaattgctgctcagtccatcggtgaacccggcacccagctcacg
ctgcgtactttccacgtgggtggtacggcctccaacattgccgtagaagccagcctgaaa
gccaagtttgcgggcgttatcgagtttgaagacatccggaccgtggacaccgtgaatgcc
gaaggcgagccggtgaaagtggtaatgggccgttcgggcgagattcgcattgtggagaaa
ggcaccggcaaggtgttcatctccaaccacgtgccctatggctcgttcctgctggttgac
gaaggtcaggaagtagagaaaggccaggagctgaacaactgggacccgtacaacgccgtg
attctggccgagttcgacggcagtgtgcagtacgacgccatcacggaaggcatcacctac
cgtgaagagtcggacgagcagacgggccaccgcgagaaggtgattattgaatccaaggac
aagacgcagaacccggccattatcgtgcgccccggcaagaagggcgacaccgaaggccag
aaagcgtacagcatccccgtaggttcgcacctgaacgtggagaacggcgagaaaatcaag
gctggtcacatcctggccaagattccacgggccgtgggcaaaacccgcgacattaccggt
ggtctgccccgcgttacggaactgttcgaagcccgcaacccctcgaacccggccgttgtg
tcggaaatcgacggtgtggtaacctacggtaccgtaaagcgtggtaaccgcgaaatcttc
gtagagtcgaaagacggggtgaagaagaagtatatggtgccgctgtccaagcacattctg
gtgcaggacaacgactttatccgcgccggcatgccgctgtcggatggtgccattacacct
tcggatatcctgagcatccagggccccggcgccgtgcaggagtacctcgtgaacgagatt
caggaagtgtaccgcttgcagggtgtgaagatcaacgacaagcacattgaggtggtcgtg
cgccagatgatgcagaaagttgtaattctggacgccggcgacaccagcttcctggagcac
caagtggtggataagatttccttcatggaggaaaacgacaccatcatcgacatgaaggtg
gtgaccaacgccggtgactcgaccaacctgaagcccggtcagattgtgacggctcgccgc
ttgcgcgacgagaacagcagcctgaggcgtcgtgacctcgccctggtggaagtgcgtgac
gcccagccggccgtatcgcggcccacgctgcaaggtatcacgcaggcgtcgctgggtacc
cagtcgttcatctcggccgcttccttccaggaaacgaccaaagtgctttcggaagctgcc
atccgtggcaaggccgacgagctgctgggcctgaaagagaacgtaatcgtaggtcacctc
atcccggctggtaccggtctgcgcgagtacacgcgtcaggtggtcggctcgaaagaggaa
atggaagccgctcaggctactaagaccgacgatgtagctgctcccgccaagcgccccgcc
cgcgcctcgcgccgcgagtcggtgtcggagtaa
DBGET
integrated database retrieval system
