Hymenobacter weizhouensis: OIS53_19580
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Entry
OIS53_19580 CDS
T11506
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hyu Hymenobacter weizhouensis
Pathway
hyu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OIS53_19580 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyu03021
]
OIS53_19580 (rho)
03019 Messenger RNA biogenesis [BR:
hyu03019
]
OIS53_19580 (rho)
Transcription machinery [BR:
hyu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OIS53_19580 (rho)
Messenger RNA biogenesis [BR:
hyu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OIS53_19580 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
ATPase_2
AAA_25
NACHT
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
UYZ63179
LinkDB
All DBs
Position
4744285..4746465
Genome browser
AA seq
726 aa
AA seq
DB search
MYTIDELKDRLLSELKEIAEKLNVGNFKKLSKQDLIYKILDQQAITPPDKLPQKIKPATA
SAEAAPAAAEPAPALAEAAPVAAVPAKAPRAARPARPATRREPARAATAEASDVAVAEEE
APAAAVAAPAPLVDAPQIAIPAPAESLDGSADGLVDGAADPDRPVKLYQRPERRPRTDRA
GRPVPAPTANGPAPETATAPEAAGEAVPAEAPAPEAPAAPAEAPAPAPRPQENGRADGRA
FRDGREFRHDQPRPDGRADRPEPPRPDGAPRNDQPREPRPEAPRAEFRHDAPRDNRDPNR
PLRDGSRPDARDMREQRREERFAAREMQRQQRQEQRQEVRTGTAEQPRPSRAVEFDITIP
GDGTLEMMPDGGYGFLRSPFYNYLASPDDIYVAPQQIKQFALKAGDTVKCTIRPPRDGEK
YYALVGVDSINGRSVEEARDRIPFNNLTPLFAEERLKLATKPSQYSTRILDLFAPIGKGQ
RGLIVAQPKTGKTVLLQEIANAISENHPEVYLMILLIDERPEEVTDMARSVKAEVLSSTF
DETADRHVKIATIAMEKAKRLVECGHDVVILLDSITRLARAYNTVQPASGKILSGGVDAN
ALHKPKRFFGAARNVEDGGSLTIIATALIETGSKMDEVIFEEFKGTGNMELQLDRKLANK
RIFPAIDVPASGTRREDLLMSKDELNRVWVLRKFMSDMTASEAMEFLKDRMKGTKDNDEF
LMAMNG
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgtacactattgatgagctgaaggaccgtttgctgtccgaattgaaagaaattgccgaa
aagctaaacgtcggaaacttcaagaaactcagcaagcaggacctcatttacaagattctt
gaccagcaggccattacgccgcccgacaagttgccccagaagataaagcccgctacggct
tccgccgaggctgctcccgctgctgctgagcctgctccggctttggccgaagcggctccg
gtggccgccgttccagccaaggccccgcgggctgcccgtcccgcccgcccggctacccgc
cgggagcccgcccgtgccgcaacagccgaagcctcggatgttgccgtagccgaagaggaa
gctcctgctgccgccgtagccgcgccggccccgcttgtggatgcgccccaaattgccata
ccagcgcccgccgagtctttggatggctctgctgatggcttggtcgatggcgcggctgac
cccgaccggcccgtgaagctctatcagcgcccggagcgccgcccccgcaccgaccgtgcc
ggccgccccgtgccggctcccacggctaatggcccggccccggaaactgctactgcccct
gaagctgctggtgaggcagtgcccgccgaagctccggctccggaagccccagccgctccg
gccgaggcccccgctccggcaccccggccccaggaaaacggccgcgccgatgggcgggct
ttccgcgacggccgcgagttccggcacgaccagccccgccccgatggccgcgccgaccgc
cccgaaccgccccgccccgacggcgccccgcgcaacgaccagccccgcgagccgcggccc
gaggccccccgcgccgagttccgccacgatgccccgcgcgacaaccgcgacccgaaccgc
cccctgcgcgacggcagccgtcccgacgcccgcgacatgcgggaacagcgccgcgaggag
cggtttgccgcgcgggagatgcagcgccagcagcggcaagagcagcgccaggaagtacgt
acgggcaccgccgagcagccccggccttcccgcgccgtggagttcgacatcaccattccg
ggtgatggcacgctggaaatgatgcccgatggtggctacggcttcctgcgcagcccgttc
tacaactacctggcctcgcccgacgacatctacgtggcgccccaacagatcaagcagttt
gccctgaaggccggcgacacggtgaagtgcaccatccgcccgccccgcgacggcgagaag
tactacgcgctggtgggcgtggacagcatcaacggccgctcggtggaagaggcccgtgac
cgtatcccgttcaacaacctcacgccgctgtttgccgaggaacgcctgaagctggccacc
aagcccagccagtacagcacccgcatcctcgacctgtttgcacccatcggcaagggccag
cggggcctgattgtggcccagcccaaaacgggtaaaacggtgctgctccaggaaattgcc
aacgccatcagcgagaaccatccagaggtgtatctgatgattctgctcatcgacgagcgc
ccggaggaggtaactgacatggcccgctcggtgaaggccgaagtgcttagctcgaccttt
gacgaaacggccgaccgccacgtgaaaattgccaccattgccatggaaaaggccaagcgc
ctcgtggagtgcggccacgacgtggtaattctgctcgactccatcacccgcctagcccgc
gcctacaacacggtgcagccggcttcgggcaagattttgtcgggtggtgtggatgccaat
gctttgcacaagcccaagcgcttcttcggggcggcccgcaacgtggaagatggcggctca
ctcaccatcattgccacggccctcatcgaaaccggctccaagatggacgaggtaatcttc
gaggaattcaaaggcaccggcaacatggaactgcagctggaccgtaagctggccaacaag
cgcatcttcccggccatcgacgtgccggcctccggtacccgccgcgaagacctgctcatg
agcaaggacgagctaaaccgggtgtgggtgctgcgcaagtttatgtcggacatgacggcc
tccgaagccatggagttcctcaaagaccgtatgaaaggcaccaaggacaacgacgagttc
ctgatggccatgaacggctag
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