Hydrogenophaga sp. SL48: IM738_06990
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Entry
IM738_06990 CDS
T11804
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hyx Hydrogenophaga sp. SL48
Pathway
hyx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IM738_06990 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyx03021
]
IM738_06990 (rho)
03019 Messenger RNA biogenesis [BR:
hyx03019
]
IM738_06990 (rho)
Transcription machinery [BR:
hyx03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
IM738_06990 (rho)
Messenger RNA biogenesis [BR:
hyx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IM738_06990 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
S1CSD-TOTE-2
Spore_III_AA
ResIII
AAA_19
AAA
Motif
Other DBs
NCBI-ProteinID:
UJW82425
LinkDB
All DBs
Position
complement(1458944..1460206)
Genome browser
AA seq
420 aa
AA seq
DB search
MHLNELKALHVSEVLKQADALEIENTGRMRKQELMFAIIKKRAKGGELVNADGVLEVLPD
GFGFLRNMDTSFTASTDDIYISPSQIRRFNLHTGDMIEGEVRIPKDGERYFALNKLDKIN
GLPPEDNKHKIMFENLTPLFPKEQMRLERDIKTEENITGRVIDIIAPIGRGQRALIVAPP
KSGKTVMMQHICHAITANHPEVELLVLLVDERPEEVTEMQRTVRGDVIASTFDEPAARHV
HVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVLPSSGKVLSGGVDSNALQRPKRF
FGAARKIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNCEIHLDRRLYEKRVFPSIQL
NRSGTRREELLLAPEILQKTRILRQFMYNMDEIEAMEMVLKSMKATKNNSEFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcacctcaacgaactcaaggcactgcatgtgtctgaagtcctcaagcaggccgacgcg
cttgagatcgaaaacaccggccgcatgcgcaagcaggagctgatgttcgccatcatcaag
aagcgcgccaaaggcggcgaactggtgaacgcggacggcgtgctcgaagtcctgcccgac
ggctttggctttctgcgcaacatggacacgagcttcaccgcgtccaccgacgacatctac
atctcgccgagccagatccgccgcttcaacctgcacaccggcgacatgatcgagggcgag
gtccgcatccccaaggatggcgagcgctacttcgcgctcaacaagctcgacaagatcaac
ggcctgccccccgaggacaacaagcacaagatcatgttcgagaacctgacgccgctgttc
cccaaggaacagatgcgcctggaacgcgacatcaagaccgaagagaacatcaccggccgc
gtcatcgacatcattgcgcccatcggccgcggccagcgcgccctgatcgtggcgccgccc
aagagcggcaagacggtcatgatgcagcacatctgccatgccatcacggccaaccacccc
gaggtggaactgctggtgctgctggtggacgagcgcccggaagaagtgaccgaaatgcag
cgcacggtgcgcggtgatgtgatcgcctctaccttcgacgaaccggccgcacgccacgtg
cacgtggccgagatggtgatcgaacgcgccaagcgcctggtcgagctgaaaaaagacgtg
gtgatcctgctcgactccatcacccgcctggcccgcgcctacaacaacgtgttgccctcc
tccggcaaggtgctgagcggtggcgtcgattccaacgccctgcagcgccccaagcgtttc
tttggtgccgcgcgcaagatcgaagaaggcggctcgctcaccatcatcgcgaccgcgctg
gtggacactggcagccgcatggacgaagtgatctttgaagaattcaagggtaccggcaac
tgcgaaatccacctggaccgccgcctgtatgaaaagcgcgtgttcccctcgatccagctc
aaccgcagcggcacccgccgcgaggagctgctgctggcgccggagatcctgcagaagacc
cgcatcctgcgccagttcatgtacaacatggacgagatcgaagccatggaaatggtcttg
aagagcatgaaggcgacgaagaacaactcagagttcttcgacatgatgcgacggggtggc
tga
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