Hydrogenophaga sp. YM1: JNX00_01970
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Entry
JNX00_01970 CDS
T10285
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hyy Hydrogenophaga sp. YM1
Pathway
hyy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hyy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JNX00_01970 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyy03021
]
JNX00_01970 (rpoB)
03400 DNA repair and recombination proteins [BR:
hyy03400
]
JNX00_01970 (rpoB)
Enzymes [BR:
hyy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JNX00_01970 (rpoB)
Transcription machinery [BR:
hyy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JNX00_01970 (rpoB)
DNA repair and recombination proteins [BR:
hyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JNX00_01970 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
UbiD
DUF5887
Motif
Other DBs
NCBI-ProteinID:
QRR34680
LinkDB
All DBs
Position
393851..397969
Genome browser
AA seq
1372 aa
AA seq
DB search
MASKYSYTERKRIRKSFGTRENVLAIPYLLQMQKDAYTAFLQADVIPKQRTTEGLQAAFT
AAFPIVSHNGFVEMKFVEYNLAKPAFDVRECQTRGLTFASAVRARVQLIIYDRESSTPQS
KVVKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLL
FSARIIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILLKAIGLTPETILANFFVNDHFR
IMDSGAQMAFVPERLRGEVARFDITDKSGKVVVAKDKRITARHTRELEQSGTTHVSVPED
FLIGRVVAKNIVDPDSGEIIAKANEEITEALLKKLRAAAIQELACIYTNELDQGAYISQT
LRIDETADEFAARVAIYRMMRPGEPPTEDAVQALFHRLFYNPDTYDLSRVGRMKFNARVG
RDEATGPMVLSNDDILAVVKILVDLRNGRGEVDDIDHLGNRRVRCVGELAENQYRTGLAR
IEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKRRV
SALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETP
YRRVVDGQVTNQIDYLSAIEEGKYVIAQANAALDKDGRLVGELVSAREKGESILTGPDTI
QYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPFVGTGIERVAAV
DSGTVVTATRGGVVDYVDATRIVIRVNDEEAVAGEVGVDIYNLIKYQRSNQNTNIHQRPI
VKKGDKLAKGDVIADGASTDLGEISIGQNMLIAFMPWNGYNFEDSILISERVVADDRYTS
IHIEELVVMARDTKLGAEEITRDIPNLAEQQLNRLDESGIIYVGAEVLPGDVLVGKVTPK
GETTLTPEEKLLRAIFGEKASDVKDTSLRVEQGSQGTVIDVQVFTREGIQRDKRAQQIID
DELKRFRLDLNDQLRIVEADAFDRIEKLLVGKVANGGPKKLAKGTTIDKAYLADVEKYHW
FDIRPADDNVAAQLESIKNSMEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVK
RRLQPGDKMAGRHGNKGVVSKIVPVEDMPHMADGTPADVVLNPLGVPSRMNVGQVLEVHL
GWAAKGLGQRIGDMLQREAKVAEVRQTLESIFNTMGKKEDFADLSDAEVIEMAQNLQHGV
PFASPVFDGASEDEIRAMLKLAYPDDIAAIKGLTETRTQAQLYDGRTGDAFERKTTVGYM
HFLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYILQEM
LTVKSDDVQGRTKVYESIVKGEHTIDAGMPESFNVLVKEIRSLGIDIELERS
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgaagtactcatacaccgaacgcaagcgcatccgaaaaagtttcggcacgcgc
gagaacgtgctcgccatcccttatctgctgcagatgcagaaggatgcctacaccgccttc
ctgcaggcggatgtgatccccaagcagcgcaccaccgaaggccttcaggccgcattcacc
gccgccttcccgatcgtctcgcacaacggtttcgtcgagatgaagttcgtggaatacaac
ctggccaagcccgcgttcgacgtgcgcgaatgccagacgcgcggcctgaccttcgcctcc
gccgtgcgcgcccgcgtgcagctcatcatctacgaccgcgagtcctccacgccgcagtcc
aaggtggtcaaggaagtgaaggagcaagaggtctacatgggcgaagtgccgctcatgacc
gacaagggctccttcatcatcaacggcacggagcgcgtgatcgtctcgcagctgcaccgc
tcgccgggtgtcttcttcgaacacgacaagggcaagacgcacagctcgggcaagctgctg
ttctcggcccgcatcattccctaccgcggctcctggctggacttcgaattcgacccgaag
gacgtgctgttcttccgcgtcgaccgtcgccgcaagatgccggtcacgatcctgctcaag
gccatcggcctgacgccggagaccatcctggcgaacttcttcgtcaacgaccacttccgc
atcatggacagcggtgcgcagatggccttcgtgcccgagcgcctgcgcggcgaagtggcg
cgcttcgacatcaccgacaagtcgggcaaggtggtggtggccaaggacaagcgcatcacc
gcgcgccacacgcgcgagctggagcagtcgggcaccacgcacgtgagcgtgcccgaggac
ttcctcatcggtcgcgtggtggccaagaacatcgttgacccggacagcggcgagatcatc
gccaaggccaacgaggaaatcaccgaagccctgctcaagaagctgcgcgccgccgccatc
caggaactggcctgcatctacaccaacgagctggaccagggcgcctacatcagccagacc
ctgcgcatcgacgagaccgccgacgagttcgccgcgcgcgtggccatctaccgcatgatg
cgccccggcgagccgccgacggaggacgcggtgcaggccctgttccaccgcctgttctac
aacccggacacctacgacctctcgcgcgtgggccgcatgaagttcaacgcccgcgtgggc
cgcgacgaggccaccggccccatggtgctgtccaacgacgacatcctggccgtggtcaag
atcctggtggacctgcgcaacgggcgtggcgaagtcgacgacatcgaccacctgggcaac
cgccgcgtgcgctgcgtcggtgaactggccgagaaccagtaccgcaccggcctcgcccgc
atcgagaaggcggtgaaggagcgtctgggccaggccgagcaagagccgctgatgccgcac
gacctgatcaactccaagccgatctccgcggcgctcaaggagtttttcggtgcctcgcag
ctgtcgcagttcatggaccagaccaacccgctggccgagatcacgcacaagcgccgcgtc
tcggccctgggcccgggcggtctgacgcgcgagcgcgccggcttcgaggtgcgcgacgtg
cacgtcacgcactacggccgcgtctgcccgatcgaaacgccggaaggcccgaacattggc
ctgatcaactcgctggccctgtacgcccgcctcaacgagtacggcttcatcgagacgccg
taccgccgcgtggtggacggccaggtcacgaaccagatcgactacctgtccgccatcgag
gaaggcaagtacgtcatcgcccaggccaacgccgcgctcgacaaggacggtcgcctggtg
ggcgagctggtctccgcgcgcgagaagggcgaatccatcctgaccggccccgacaccatc
cagtacatggacgtgtcgccggcgcagatcgtgtcggtggccgcgtcgctggtgcccttc
ctggagcacgacgacgccaaccgcgcgctgatgggcgccaacatgtctcgtcaggccgtg
cccgtgctgcgccccgagaagcccttcgtgggcaccggcatcgagcgcgtggccgcggtc
gactccggcacggtggtgacggccacccgcggtggcgtggtcgactacgtcgacgccacc
cgcatcgtgatccgcgtcaacgacgaggaagcggtggccggcgaagtgggcgtggacatc
tacaacctcatcaagtaccagcgttccaaccagaacaccaacatccaccagcgccccatc
gtcaagaagggcgacaagctggccaagggtgacgtgatcgcggacggcgcgtccaccgac
ctcggcgaaatctcgatcggccagaacatgctgatcgccttcatgccctggaacggctac
aacttcgaggactcgatcctcatcagcgaacgcgtggtggccgacgaccgctacaccagc
atccacatcgaggagctggtggtgatggcgcgcgacaccaagctgggcgccgaggaaatc
acccgcgacattccgaacctggccgagcagcagctcaaccgcctggacgagtccggcatc
atctacgtgggcgccgaggtgctgcccggcgacgtgctggtcggcaaggtcacgcccaag
ggcgagaccacgctcacgcccgaagagaagctgctgcgcgcgatcttcggcgagaaggcc
tccgacgtgaaggacacctcgctgcgcgtcgagcagggctcgcagggcacggtgatcgac
gtgcaggtcttcacccgcgaaggcatccagcgcgacaagcgcgcccagcagatcatcgac
gacgagctcaagcgcttccgcctcgacctgaacgaccagttgcgcatcgtcgaggccgac
gccttcgaccgcatcgagaagctgctggtgggcaaggtcgccaacggcggcccgaagaag
ctggccaagggcacgaccatcgacaaggcctacctggccgacgtcgagaagtaccactgg
ttcgacatccgccccgcggacgacaacgtggccgcgcagctcgagtcgatcaagaactcg
atggagcagacgcgccacagcttcgacctcgcgttcgaagagaagcgcaagaagctcacg
cagggcgacgagctgcccgccggcgtgctcaagatggtcaaggtctacctggccgtcaag
cgccgcctgcagcccggcgacaagatggccggccgccacggcaacaagggcgtggtctcg
aagatcgtgcccgtggaagacatgccgcacatggccgacggcacccccgccgacgtggtg
ctcaacccgctgggcgtgccgtcgcgcatgaacgtgggccaggtgctggaagtgcacctg
ggctgggccgccaagggcctgggccagcgcatcggcgacatgctgcagcgcgaagccaag
gtggcggaggtgcgccagaccctcgagtccatcttcaacaccatgggcaagaaggaagac
tttgccgacctgtccgacgccgaggtcatcgagatggcgcagaacctgcagcacggcgtg
cccttcgcgtcgcccgtgttcgacggtgcctcggaagacgagatccgcgccatgctgaag
ctggcctacccggacgacatcgccgcgatcaagggcctgaccgagacgcgcacccaggcg
cagctctacgacggccgcaccggcgacgccttcgagcgcaagaccaccgtgggctacatg
cacttcctcaagctgcaccacttggtcgacgacaagatgcacgcccgttccaccggcccg
tactcgctcgtcacccagcagccgctgggcggcaaggcgcagttcggtggccagcgtttc
ggcgagatggaggtctgggcgctggaagcttacggcgcgtcctacatcctgcaggagatg
ctcaccgtcaagtccgacgacgtgcagggccgcaccaaggtgtacgagtccatcgtcaag
ggcgagcacaccatcgacgcgggcatgcccgagtcgttcaacgtgctggtcaaagagatc
cgttcgctcggtatcgatatcgaactcgagcgttcgtga
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integrated database retrieval system
