Hydrogenophaga sp. YM1: JNX00_04355
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Entry
JNX00_04355 CDS
T10285
Name
(GenBank) RNA polymerase sigma factor FliA
KO
K02405
RNA polymerase sigma factor FliA
Organism
hyy Hydrogenophaga sp. YM1
Pathway
hyy02020
Two-component system
hyy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hyy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
JNX00_04355
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JNX00_04355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyy03021
]
JNX00_04355
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
hyy02035
]
JNX00_04355
Transcription machinery [BR:
hyy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JNX00_04355
Bacterial motility proteins [BR:
hyy02035
]
Flagellar system
Flagellar assembly proteins
Stator
JNX00_04355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
Sigma70_r3
HTH_23
UPF0122
GerE
Phage_terminase
CT_C_D
Motif
Other DBs
NCBI-ProteinID:
QRR35117
LinkDB
All DBs
Position
888073..888792
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AA seq
239 aa
AA seq
DB search
MYTAKGTLNREDQLRKYSPLVRRLAHHMIAKLPPSVELDDLIQVGMIGLTEAIARYEPSQ
GVQFETFASQRIRGAMIDELRDGDWMSRGSRKSQKDIEQAVHRLQQKLHRPPRESEIAAE
MGLTLADYQTLLAKVRGTQLVYLEDISGGGGDDEDGFLDRHMGDHEADPSSVLQDQRMRM
ALVGAIKTLPEREQHIMSMYYEHDMNLKEIAAVLGVTESRVCQLHSQSIARLRSKLREH
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
atgtacaccgccaaaggcacgctcaaccgcgaggaccagctgcgcaagtacagccccctg
gtccgtcgcctggcgcaccacatgatcgccaagctgcccccaagcgtggagctcgacgac
ctgatccaggtcggcatgatcggcctgaccgaggcgattgcccgctacgagccctcgcag
ggcgtgcagttcgagaccttcgcgagccagcgcatccgcggcgccatgatcgacgagttg
cgcgacggcgactggatgagccgcggctcgcgcaagagccagaaggacatcgagcaggcc
gtgcaccgcctgcagcagaagctgcaccgcccgccgcgcgagagcgagatcgcggccgag
atgggcctgaccctggccgactaccagaccctgctggccaaggtgcgcggcacgcagctg
gtgtacctggaggacatcagtggcggcggtggcgacgacgaggacggtttcctggaccgc
cacatgggcgaccacgaggccgacccctcatccgtgctgcaggaccagcgcatgcgcatg
gccctggtgggggcgatcaagaccctgcccgagcgcgagcagcacatcatgagcatgtac
tacgagcacgacatgaacctgaaggaaatcgccgccgtgctcggcgtgaccgaatcgcgc
gtgtgccagctgcacagccagtcgatcgcgcggctgcgctcgaagctgcgggagcattga
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