Hydrogenophaga sp. YM1: JNX00_05100
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Entry
JNX00_05100 CDS
T10285
Name
(GenBank) RNA pyrophosphohydrolase
KO
K08311
putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
Organism
hyy Hydrogenophaga sp. YM1
Pathway
hyy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JNX00_05100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyy03019
]
JNX00_05100
Messenger RNA biogenesis [BR:
hyy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JNX00_05100
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Ortholog
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GFIT
Motif
Pfam:
NUDIX
Nudt16-like
NUDIX_4
Tautomerase_2
Pep_M12B_propep
Motif
Other DBs
NCBI-ProteinID:
QRR35254
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Position
complement(1034543..1035184)
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AA seq
213 aa
AA seq
DB search
MLDREGFRPNVGIILLNQKNQVFWGKRIRSHSWQFPQGGIDRGETPEQAMFRELHEEVGL
RPEHVAIVARTKDWLRYEVPDRFIRRDARGHYKGQKQIWYLLRLVAQDWHLNLRATSHPE
FDAWRWNDYWVPLDVVVEFKRGVYEMALTELARYVPRQDGGRGRYPRHHPGRGYRPVDGF
PAAEAPPGLELPPGASFDPGPQPSIRPEGAVSK
NT seq
642 nt
NT seq
+upstream
nt +downstream
nt
atgcttgacagagagggcttcaggcccaatgtcggcatcattctgctcaaccagaaaaac
caggtgttctggggcaagcgcatccgctcccattcctggcagttcccgcaagggggcatc
gaccgcggtgaaacgcccgaacaggcgatgttccgcgaactgcacgaggaagtcggactg
cgccccgagcacgtggccatcgtggcccgcacgaaggactggttgcgctacgaagtgcct
gaccgcttcatccggcgggatgcccgcggccactacaaggggcagaagcagatctggtac
ctgctgcgcctcgtcgcgcaggactggcacctgaacctgcgcgccaccagccacccggag
ttcgacgcctggcgctggaacgactactgggtgccgctagacgtggtcgtcgaattcaag
cgcggcgtctacgagatggccttgaccgagttggcgcgttacgtcccgcgccaggacggc
ggccgcggccgctacccgcgccaccacccggggcgcggctatcgcccggttgatggcttt
cccgccgccgaggcgccgcccggcctggaactgccccccggcgccagcttcgaccccggg
ccccaacccagcattcgccccgagggcgccgtctccaaatga
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