Hydrogenophaga sp. YM1: JNX00_06720
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Entry
JNX00_06720 CDS
T10285
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hyy Hydrogenophaga sp. YM1
Pathway
hyy03420
Nucleotide excision repair
hyy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JNX00_06720
03430 Mismatch repair
JNX00_06720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyy03400
]
JNX00_06720
Enzymes [BR:
hyy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JNX00_06720
DNA repair and recombination proteins [BR:
hyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JNX00_06720
MMR (mismatch excision repair)
Other MMR factors
JNX00_06720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QRR35554
LinkDB
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Position
1382012..1384372
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AA seq
786 aa
AA seq
DB search
MPLDTAPNPSPLVAGLNAEQAAAVTLPAEHALILAGAGSGKTRVLTTRIAWLLQTGQVGP
GGVLAVTFTNKAAKEMVTRLSALLPVNVRGMWIGTFHGLCNRLLRAHHQLAGLPATFQIL
DTQDQLSAIKRLCKQFNVDDERFPPKQLQYFIAGCKEDGQRPRDVPARDEETRKKVELYA
LYEEQCQREGVVDFGELMLRSYELLRDQDAIRAHYQRRFRHILIDEFQDTNRLQYAWIKL
FSPPPMEGLDVAVGNAVFAVGDDDQSIYAFRGARVGNMADFVREYRVQHQIKLEQNYRSV
SNILDAANHLIGHNQRRLGKNLRTDAGAGEPVRINESPSDFIEAQWVVDEIKSLVREETP
RSEIAILYRSNAQSRVIETALFNAGLPYRVYGGLRFFERAEIKHALAYLRLIENPRDDTS
FLRVLNFPPRGIGARSVEQLQDVARAAGCSLHDAVSAVTGRAGTAIAGFVAKIDVMRERS
EGSHLKGIVELVLEHSGLVEHYRQEREGQERVENLEELVNAAESFVMQEGFGREAVALTQ
SPASQGLDLNAPVLDEPLAPDADTGETLSPLAAFLSHAALESGDNQAQAGQDAVQLMTVH
AAKGLEFDCVFIVGLEEGLFPHENAMSDRDGLEEERRLMYVAITRARQRLYLSHSQTRLL
HGQTRYNLKSRFFDELPEHCLKWLTPPQPSGWGGTGSAGWGGHRALGTPVPQPAWSPAWK
AASAPAPEPDRGTPIKSGMAVFHNKFGEGKVLAVEGAGDDARAQVNFPRHGTKWLALSVA
KLTPIE
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgcccctggacaccgccccgaatccctcgccgctggtcgccggcctcaatgccgagcag
gccgccgccgtcaccctgcccgccgaacacgcgctcatcctcgcgggcgccggttcgggc
aaaacgcgcgtgctcaccacgcgcatcgcctggctgctgcaaacgggccaggtggggccg
ggcggtgtgctggccgtgaccttcaccaacaaggcggcgaaggaaatggtcacgcgcctg
tcggccctgctgccggtgaacgtgcgcggcatgtggatcggcaccttccacggcctgtgc
aaccgcctgctgcgcgcgcaccaccagctcgcgggcctgccggccaccttccagatcctg
gacacccaggaccagctctcggccatcaagcgcctgtgcaagcagttcaatgtcgacgac
gagcgcttcccgcccaagcagctgcagtacttcatcgccggttgcaaggaagacggccag
cgcccgcgcgacgtgcccgcgcgcgacgaagagacgcgcaagaaagtcgagctctacgcg
ctgtacgaggagcaatgccagcgcgaaggcgtggtcgattttggcgagctgatgctgcga
agctacgagctgctgcgcgaccaggacgccatccgcgcgcactaccagcggcgcttccgc
cacatcctgatcgacgagttccaggacaccaacaggctgcagtacgcctggatcaagctg
ttctcgccgccccccatggaaggcctggacgtggccgtgggcaacgcggtgttcgctgtg
ggcgatgacgaccagagcatctacgccttccgcggcgcgcgcgtgggcaacatggccgac
ttcgtgcgcgagtaccgcgtgcagcaccagatcaagctcgagcagaactaccgcagcgtc
agcaacatcctggacgccgcgaaccacctcatcggccacaaccagcgccgcctcggcaag
aacctgcgcaccgacgcgggcgcgggcgagccggtgcgcatcaacgagtcgcccagcgat
ttcatcgaggcgcagtgggtggtcgacgagatcaagtccctggtgcgcgaggaaacgccg
cgcagcgagatcgccatcctctaccgcagcaacgcgcagagccgcgtgatcgagaccgcg
ctgttcaacgccggcctgccctaccgcgtgtatggcggcctgcgcttcttcgagcgtgcc
gagatcaagcacgccctggcctacctgcgcctgatcgagaacccgcgcgacgacaccagc
ttcctgcgcgtgctcaacttcccgccgcgcggcatcggcgcgcgcagcgtggagcagctg
caggacgtggcgcgcgcggccggctgttcgctgcacgacgcggtgagcgcggtcaccggg
cgcgcgggcacggccatcgcgggcttcgtcgccaagatcgacgtgatgcgcgagcgcagc
gagggcagccacctcaagggcatcgtcgagctggtgctggagcacagcggcctggtggag
cactaccgccaggagcgcgaaggccaggagcgcgtggagaacctggaggaactggtcaac
gcggccgagagcttcgtgatgcaggaaggcttcggccgcgaggccgtggcgctgacgcaa
agcccggccagccagggcctggacctgaacgcccccgtgctcgacgagcccctggccccc
gacgccgacaccggcgagaccctgagcccgctcgccgccttcctgtcgcacgccgcgctc
gaatcgggcgacaaccaggcccaggccggacaggacgcggtgcagctcatgaccgtgcac
gcggccaagggtctggagttcgactgcgtcttcatcgtcggcctggaggaaggcctgttc
ccgcacgagaacgccatgagcgaccgcgacggcctggaagaggagcgccgcctgatgtac
gtggcgatcacgcgcgcgcgccagcgcctgtacctgagccattcgcagacgcggctgctg
cacggccagacgcgctacaacctcaagagccgtttcttcgatgaattgcccgagcactgc
ctgaagtggctgacgccgccgcagccttcgggctggggcggcacgggcagcgcgggctgg
ggtggccaccgcgcgctgggcaccccggtgccgcagccggcgtggtcgccggcctggaag
gccgccagcgcgcccgcgcccgaacccgatcgcggcacgccgatcaagagcggcatggcg
gtgtttcacaacaagttcggcgagggcaaggtgctcgcggtggagggcgcgggcgatgac
gcgcgcgcgcaggtgaacttcccgcgccacggcaccaagtggctggcgctgagcgtggcc
aagctcacgcccatcgaatag
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