Hydrogenophaga sp. YM1: JNX00_08510
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Entry
JNX00_08510 CDS
T10285
Symbol
gcvP
Name
(GenBank) aminomethyl-transferring glycine dehydrogenase
KO
K00281
glycine cleavage system P protein (glycine dehydrogenase) [EC:
1.4.4.2
]
Organism
hyy Hydrogenophaga sp. YM1
Pathway
hyy00260
Glycine, serine and threonine metabolism
hyy00630
Glyoxylate and dicarboxylate metabolism
hyy00670
One carbon pool by folate
hyy00785
Lipoic acid metabolism
hyy01100
Metabolic pathways
hyy01110
Biosynthesis of secondary metabolites
hyy01200
Carbon metabolism
Module
hyy_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
hyy00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
JNX00_08510 (gcvP)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
JNX00_08510 (gcvP)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
JNX00_08510 (gcvP)
00670 One carbon pool by folate
JNX00_08510 (gcvP)
Enzymes [BR:
hyy01000
]
1. Oxidoreductases
1.4 Acting on the CH-NH2 group of donors
1.4.4 With a disulfide as acceptor
1.4.4.2 glycine dehydrogenase (aminomethyl-transferring)
JNX00_08510 (gcvP)
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Motif
Pfam:
GDC-P
GcvP2_C
Aminotran_5
Beta_elim_lyase
Aminotran_1_2
Qua1
Motif
Other DBs
NCBI-ProteinID:
QRR35884
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Position
complement(1779183..1782092)
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AA seq
969 aa
AA seq
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MLMPSVKPLGELENVSEFVARHIGIDEAGERHMLSVIGEASRRALIDSIVPRPIARRQGM
QLPAPLTEAAALAELQGIARQNKLLKSFIGQGYHGTHTPGVILRNILENPAWYTAYTPYQ
AEISQGRMEALVNFQTMVTDLTGMDIANASMLDEATAAAEAMTLAKRSVKAKGHAFVVSG
DTHPQTIEVIQTRAAPLGLEVRVAMSGEEWDAMLAADDYFAAFTQYPASSGWLHDWTADA
ATVHGKNAAFIVAADLLALTLIKPPGEMGADIVVGTTQRFGMPMGNGGPHAAYMACRDGF
KRSLPGRLVGVSVDTHGQPAYRLALQTREQHIRREKATSNICTAQVLPAVIASMYAVYHG
PQGLKRIAQRVAAYTAILAKGLAQLGYTDTHHGDQGVFDTLALRVDPARANALMARAVAH
GANLRQAWDEYVIVTLDETTTREDIALLWTIFAKDGQALPSVEAFEKGLEPLIPDGLRRS
SGFLTHPVFNTHHSETGMLRYIRMLSDKDLALDRSMIPLGSCTMKLNATSEMIPITWPEF
ANVHPFAPADQRQGYALLDRQLRDWLCEATGYAGISLQPNAGSQGEYAGLLVIQAYHRSR
GEGHRNICLIPSSAHGTNPASAQMVSLQVVVTKCDENGNVDLADLKAKCEQHSKHLAAVM
ITYPSTHGVFETQVKELCALVHQHGGRVYVDGANMNALVGVAAPGEFGGDVSHLNLHKTF
CIPHGGGGPGVGPVCVVQDLVPFLPGHAAGGLPVNGVGAISAAPLGNAAVLPISWMYIRM
MGAEGLRHATETAILSANYISARLKDHFPTLYASANGHVAHECILDLRDLKDTSGVMAED
VAKRLIDYGFHAPTLSFPVANTLMVEPTESETLEEIDRFIEAMIAIREEIRRIEKGEWPQ
DDNPLKHAPHTAASLLKGEWTRAYPRETGAAVLDTRAHAKYWPPVGRVDNVYGDRNLFCS
CVPIGDLAD
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgctcatgccctccgtcaagcccctgggtgaactcgaaaacgtcagcgaattcgtcgcg
cgccacatcggcatcgacgaagccggcgagcgccacatgctctcggtcatcggcgaggcc
tcgcgccgcgcgctgatcgacagcatcgtgccgcgcccgatcgcgcgccgccagggcatg
caactgcccgcgccgctgaccgaggccgccgcgctggccgagctccagggcatcgcgcgc
cagaacaagctgctcaagagcttcatcggccagggctaccacggcacccacacaccgggc
gtcatcctgcgcaacatcctggagaaccccgcctggtacacggcttacacgccctaccag
gccgaaatctcgcagggccgaatggaggcgctggtcaacttccagaccatggtcaccgac
ctgacgggcatggacatcgccaacgcctccatgctcgacgaggccacggccgcagccgag
gccatgacgctggccaagcgctccgtgaaggccaagggccatgccttcgtggtgtcgggc
gacacgcacccgcagaccatcgaggtgatccagacgcgcgcggcgccgctgggcctggag
gtgcgcgtggccatgtcgggcgaggaatgggacgccatgctggcggccgacgactacttc
gcggccttcacgcagtacccggcctccagcggctggctgcacgactggacggcggacgcc
gccaccgtgcacggcaagaacgccgccttcatcgtggccgccgacctgctggccctgacc
ctgatcaagccgcccggcgagatgggcgccgacatcgtggtcggcaccacgcagcgcttc
ggcatgcccatgggcaatggcggcccgcacgccgcctacatggcctgccgcgacgggttc
aagcgcagcctgcccggccgcctggtgggcgtgagcgtggacacccatggccagccggcc
taccgcctggccctgcaaacgcgcgagcagcacatccgccgcgagaaggccaccagcaac
atctgcacggcgcaggtgctgcccgcggtgatcgccagcatgtacgccgtgtaccacggc
ccgcagggcttgaagcgcatcgcgcagcgcgtggcggcgtacacggccatcctggccaag
ggcctggcccaactgggctacaccgacacgcaccacggcgaccagggtgtgttcgacacc
ctcgccctgcgcgtggacccggcccgggcgaacgcgctcatggcgcgcgccgtggcccac
ggcgccaacctgcgccaggcctgggacgagtacgtgatcgtcacgctggacgaaaccacc
acacgcgaggacatcgccctgctgtggaccatcttcgcgaaggacggccaggccctgccc
tcggtcgaggccttcgagaaaggcctggagccgctgatccccgacggcctgcgccgcagc
agcggcttcctcacgcacccggtcttcaacacccaccacagcgagaccggcatgctgcgc
tacatccgcatgctgtcggacaaggacctcgcgctggaccgcagcatgatcccgctgggc
tcgtgcaccatgaagctgaacgccaccagcgagatgatccccatcacctggcccgagttc
gcgaacgtgcaccccttcgccccggccgaccagcgccagggctatgccctgctcgaccgg
caactgcgcgactggctgtgcgaggccaccggctacgccggcatcagcctgcagcccaac
gccggttcgcagggcgagtacgccggcctgctggtcatccaggcctaccaccgatcgcgc
ggcgaaggccaccgcaacatctgcctgatccccagcagcgcgcacggcaccaacccggcc
agcgcgcagatggtgagcctgcaggtcgtggtcaccaagtgcgacgagaacggcaacgtc
gacctggccgacctgaaggccaagtgcgagcagcactccaagcacctggccgcggtgatg
atcacctaccccagcacgcacggcgtgttcgagacccaggtgaaagagctgtgcgccctg
gtgcaccagcacggcgggcgcgtctacgtggacggcgccaacatgaacgccctggtgggc
gtggccgcgccgggcgagttcggcggcgacgtgagccacctcaacctgcacaagaccttc
tgcatcccgcacggcggcggcggcccgggcgtgggcccggtctgcgtggtgcaagacctg
gtgcccttcctgcccggccacgcggcgggtggcctgccggtcaatggcgtgggcgccatc
tcggccgcgccgctgggcaacgcggccgtgctgccgatctcgtggatgtacatccgcatg
atgggcgccgagggcctgcggcacgccaccgagacggccatcctctcggccaactacatc
agcgcgcgcctcaaggaccacttccccacgctgtacgcgagcgccaacggtcatgtggcg
cacgagtgcatcctcgacctgcgcgacctgaaagacaccagcggtgtgatggccgaggac
gtggccaagcgcctgatcgactacggcttccacgcgcccacgctgtcctttccggtggcc
aacacgctcatggtggagcccaccgagagcgagacgctggaggaaatcgaccgcttcatc
gaggccatgatcgccatccgcgaggaaatccgccgcatcgaaaaaggcgaatggccgcag
gacgacaaccccctgaagcacgcgccgcacaccgcggccagcctgctcaagggtgagtgg
acgcgcgcctacccgcgcgagaccggcgccgccgtgctggacacgcgcgcacacgccaag
tactggccgcccgtgggccgtgtggacaacgtctacggcgaccgcaacctgttctgcagc
tgcgtgccgatcggggacctggcggactga
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