Hydrogenophaga sp. YM1: JNX00_13775
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Entry
JNX00_13775 CDS
T10285
Symbol
carB
Name
(GenBank) carbamoyl-phosphate synthase large subunit
KO
K01955
carbamoyl-phosphate synthase large subunit [EC:
6.3.5.5
]
Organism
hyy Hydrogenophaga sp. YM1
Pathway
hyy00220
Arginine biosynthesis
hyy00240
Pyrimidine metabolism
hyy00250
Alanine, aspartate and glutamate metabolism
hyy01100
Metabolic pathways
hyy01110
Biosynthesis of secondary metabolites
hyy01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
hyy00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
JNX00_13775 (carB)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
JNX00_13775 (carB)
00220 Arginine biosynthesis
JNX00_13775 (carB)
Enzymes [BR:
hyy01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.5 carbamoyl-phosphate synthase (glutamine-hydrolysing)
JNX00_13775 (carB)
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Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
CPSase_L_D1
CPSase_L_D3
MGS
ATP-grasp
ATP-grasp_4
Dala_Dala_lig_C
ATPgrasp_Ter
ATP-grasp_3
ATP-grasp_5
Motif
Other DBs
NCBI-ProteinID:
QRR32738
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Position
complement(2938184..2941468)
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AA seq
1094 aa
AA seq
DB search
MPKRTDIQTVLIIGAGPIIIGQACEFDYSGVQACKALREEGYRVVLINSNPATIMTDPAT
ADVTYIEPITWQTVEKIIAKERPKTAGGFAILPTMGGQTALNCALDLWRHGVLAKYGVEL
IGATPEAIDKAEDRLKFKDAMTRIGLGSARSGIAHTLEEAWGVQKTVGFPVVIRPSFTLG
GTGGGIAYNPEEFETICKRGIEASPTNELLIEESLLGWKEYEMEVVRDKADNCIIVCSIE
NLDPMGVHTGDSITVAPAQTLTDKEYQILRNASLAVLREIGVDTGGSNVQFSINPKDGRM
VVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELRNEITGGATPASFEPSIDYV
VTKIPRFAFEKFKDADDRLTTQMKSVGEVMAMGRTFQESFQKALRGLEVGVDGMNEKTQD
RETLEKELGEPGPERIWYVGDAFAAGWTVDEVHQFTKIDKWFLVQIEEIVKLELAMDALT
AQKGEGALASLDVATLRGLKKKGFSDRRLAKLLKTSDTAVRARRRELGVRPVYKRVDTCA
AEFATTTAYLYSTYEGHGQAECEAEPTGNKKIMVLGGGPNRIGQGIEFDYCCVHAALAMR
EDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPAGVIVQYGGQTPLKL
ALGLEAAGVPIIGTSPDMIDAAEDRERFQKLLHELKLRQPPNATARTETEALEKAAALGY
PLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDAVRDA
TGRVFIGGVMEHIEQAGVHSGDSACSLPPYYLSKATVDELKRQTAAMAQGLNVVGLMNVQ
FAIQEIEEDGQKKDVIYVLEVNPRASRTVPFVSKATGIQLAKVAARCMAGQSLDSQGIGE
EVVPPYFSVKEAVFPFVKFPGVDTILGPEMKSTGEVMGVGKTFGEAFVKSQIGAGTKLPT
AGKVFLTVKNSDKPRAVDVARQLVDLGFELIATRGTAAAIEAAGLAVQTVNKVTEGRPHI
VDMIKNGDIALVINTVEERRNAIADSRAIRTSALLARVTTFTTIAGAEAAVEGMKYMASL
DVISVQDMHALIAA
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagagaacagacatccagaccgtgctgatcatcggcgccggtcccatcatcatc
ggccaggcctgcgagttcgattactccggcgtgcaggcctgcaaggccctgcgcgaagag
ggctaccgcgtggtgctgatcaacagcaaccccgccaccatcatgaccgacccggccacg
gccgacgtcacctacatcgagcccatcacctggcagacggtcgagaagatcatcgccaag
gagcgccccaaaacggccggcggcttcgccatcctgccgaccatgggcggccagacggcg
ctcaactgcgcgctggacctctggcgccacggcgtgctggccaaatatggcgtcgagctg
atcggcgccacgcccgaagccatcgacaaggccgaggaccgcctgaagttcaaggacgcg
atgacgcgcatcggcctgggttcggcgcgctcgggcatcgcccacacgctggaagaggcc
tggggcgtgcaaaagaccgtgggcttcccggtcgtcattcgccccagcttcacgctgggc
ggcacgggcggcggcatcgcctacaaccccgaagagttcgagaccatctgcaagcgcggc
atcgaggcctcgcccaccaatgagctgctgatcgaagagtcgctgctcggctggaaagag
tacgagatggaggtcgtgcgcgacaaggccgacaactgcatcatcgtctgctcgatcgaa
aacctcgaccccatgggcgtgcacaccggcgactcgatcaccgtggcgcccgcgcagacg
ctgaccgacaaggagtaccagatcctgcgcaacgccagcctggcggtgctgcgcgagatc
ggcgtcgacaccggtggctccaacgtgcagttctccatcaacccgaaagacggccgcatg
gtcgtcatcgagatgaacccgcgcgtgtcgcgttcgtccgcgctggcctccaaggccacg
ggcttccccatcgccaaggtcgcggccaagctggccgtgggctacacgctcgacgagctg
cgcaacgagatcaccggtggcgccacgcccgcgagcttcgagccctcgatcgactacgtg
gtcaccaagatcccgcgcttcgccttcgagaagttcaaggacgccgacgaccgcctgacc
acgcagatgaagtccgtgggcgaggtcatggccatgggccgcaccttccaggagagcttc
cagaaggccctgcgcggcctggaggtcggcgtcgacggcatgaacgagaagacgcaggac
cgcgagacgctggaaaaggaactcggtgagcccggccccgagcgcatctggtacgtgggc
gacgccttcgccgcgggctggacggtcgacgaggtgcaccagttcaccaagatcgacaag
tggttcctcgtgcagatcgaggagatcgtcaagctcgaactcgccatggacgcgctgacc
gcgcagaagggcgagggcgcgctggcctcgctggacgtggccacgctgcggggcctgaag
aagaaaggcttctccgatcgccgcctggccaagctgctcaagaccagcgacaccgccgtg
cgggcgcgccgccgcgagctgggcgtgcgcccggtctacaagcgcgtggacacctgcgcg
gccgaattcgccaccaccacggcctacctgtactccacttacgaaggccacggccaggcc
gagtgcgaggccgagcccactggcaacaagaagatcatggtgctgggcggcggtcccaac
cgcatcggccagggcatcgagttcgactactgctgcgtgcacgccgcgctcgccatgcgc
gaggatggctacgagaccatcatggtcaactgcaaccccgagaccgtgtcgaccgactac
gacaccagcgaccgcctctacttcgagccgctcacgctggaagacgtgctggagatcgtc
gacaaggaaaagccggccggcgtgatcgtgcagtacggcggccagacgccgctcaagctc
gcgctgggcctggaggccgcgggcgtgcccatcatcggcacctcgcccgacatgatcgac
gcggccgaagaccgcgagcgtttccagaagctgctgcacgagctcaagctgcgccagccg
cccaacgccaccgcgcgcaccgagacggaagcgctcgagaaggccgccgcgctgggttac
ccgctggtggtgcgcccgagctatgtgctcggcggccgcgccatggaaatcgtgcacgag
cagcgcgacctcgagcgctacatgcgcgaggccgtgaaggtcagcaacgattcgccggtg
ctgctcgaccgcttcctcaacgacgccatcgagtgcgacgtggacgccgtgcgcgacgcc
acgggccgcgtgttcatcggcggcgtgatggagcacatcgaacaggccggcgtgcacagc
ggcgactccgcctgctcgctgccgccgtactacctgagcaaggccacggtggacgagctc
aagcgccagaccgcggccatggcccagggcctgaacgtggtcggtctcatgaacgtgcag
ttcgcgatccaggagatcgaggaagacggccagaagaaggacgtgatctacgtgctcgaa
gtgaacccgcgcgcctcgcgcacggtgcccttcgtctccaaggccacgggcatccagctg
gccaaggtggccgcgcgctgcatggccggccagtcgctcgactcgcagggcatcggtgaa
gaggtggtgccgccgtacttcagcgtgaaggaagcggtcttccccttcgtcaagttcccg
ggtgtggacaccatcctcggccccgagatgaagtccactggcgaggtcatgggcgtgggc
aagaccttcggcgaagccttcgtgaagagccagatcggcgcgggcaccaagctgcccacg
gcgggcaaggtcttcctgacggtgaagaacagcgacaagccgcgggccgtggacgtggcg
cgccagctcgtcgacctgggcttcgagctgatcgccacgcgcggcacggcggcggccatc
gaggcggccggcctggcggtgcagacggtcaacaaggtcaccgagggccgcccgcacatc
gtggacatgatcaagaacggcgacatcgcgctggtgatcaacacggtggaggagcgccgc
aacgccatcgccgactcgcgcgcgattcgcacttcggcgctgctggcgcgcgtcaccacc
ttcaccaccatcgcgggcgccgaggcggccgtcgagggcatgaagtacatggccagcctg
gacgtcatctcggtgcaggacatgcacgcgctgatcgcggcctga
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