Hydrogenophaga sp. YM1: JNX00_14470
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Entry
JNX00_14470 CDS
T10285
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hyy Hydrogenophaga sp. YM1
Brite
Enzymes [BR:
hyy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JNX00_14470 (hrpA)
Messenger RNA biogenesis [BR:
hyy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JNX00_14470 (hrpA)
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GFIT
Other DBs
NCBI-ProteinID:
QRR32867
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Position
complement(3079658..3083548)
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AA seq
1296 aa
AA seq
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MPTPALHLEFPEALPVSARRHEIEAAVREHQVVIVCGETGSGKTTQLPKIALAMGRGRLN
AKPGQRGRLIGHTQPRRIAASSVAKRIAEELKTPLGEVVGYKVRFQDRLSREASVKLMTD
GILLAETQTDPDLNAYDTIIIDEAHERSLNIDFLLGYLRQLLPRRPDLKVIVTSATIDAD
RFAAYFSSSKGPAPVLMVSGRTYPVEVRWRPFEESREFDLNDAIADGVDELWRGGQGGDI
LVFLPGEREIREAADHLRKHLAHQPLNRHAEVLPLFARLSQAEQDRIFQPHGQRRIVLAT
NVAETSLTVPGIRYVIDAGTARVKRYSFRQKVEQLQIEPISQAAANQRAGRCGRVADGIC
IRLYDEADFNNRPRFTDPEILRSSLAGVILRMKALHLGAVEDFAFVDAPQRRAIADGYQL
LAELGAVDDDNQLTPTGQSLARLPLDPRVGRMILAAREHHALDEVLVIAAALSVQDVRDR
PIDKQAQADQAHAKFDDEKSEFTGTLKLWKWLEDSRGGHGQAHKLSHRQYENLLRENFIN
VRRVREWRDTHSQLHTVVGEQGWKPNTTPASYEQLHSAMLSGLLGNLGVKSETEDWYLGA
RGIKFHRHPGAHLSKKPGRWIVCAELVETTRLFGRGIAAIEPAWVERVGAHLLKKQLLDP
HWEKKAARVSALERATLYGLVIYHNRRADYGRIDPTGAREIFIREALVQGEWDTKLPFLA
ANQKLVRQVMELEHKSRRQDVLVDDEVIYAWYDEQVPAELCNGAAFERWYAQAARENPKL
LFLTREDLMRHEAAGITAQAFPRTVRLGGVDCAAAYLHEPGDPRDGLSVTVPIYALNQVS
EERIDWLVPGMLKDKVLALLKTLHQRPRSRLVPLPATAERFTEALCAPEAFAQGNFLDAV
LKRVRAATQLDIVRNDLKADQLPAHLFMHLRVVDEHGRQLGQGRSLAALKAELGSQARGA
FQALAALKVPAAVPAPAGASPGAPSPALAGQATRVAKAAPPAAPAVDASQRHTRWDFGEL
PELLEIRRGGQTLIGFPALVDDGDAVRIEVFDEPELAQARHREGLRRLVALQIKDALKYL
EKNIPGLQAMGAAFMGVDKERGGGTLEELRQQLLELALDRAFLQEPLPADAKAFEQRVAD
GRGRLNLIAAEIARSAGAILTEFAAAQRKLKDAKPPADVAADIAQQLQRLVGRRFLVETP
HAQLQHLPRYLKAVQLRLDKQRGDPARDAARLAELKPQDQRYWRLVAERKGVQDPRLQEL
RWLLEELRVSFFAQELRTPQPVSLKRLDKAWAQLQA
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
ttgcccacgcccgccctgcacctggagttccccgaggccttgcccgtgtcggcgcgccgc
cacgagatcgaggcggcggtgcgcgagcaccaggtggtcatcgtctgcggcgagaccggc
tcgggcaagaccacgcagctgcccaagatcgcgctggccatggggcgcggccgcctgaat
gcgaagcccggccagcgcggccgcctgatcggccacacccagccgcggcgcatcgccgcc
agctcggtggccaagcgcatcgccgaggaactgaagaccccgctgggcgaggtggtgggc
tacaaggtgcgtttccaggaccggctctcgcgcgaggcttcggtcaagctgatgaccgat
ggcatcctgctcgccgagacgcagaccgacccggacctgaacgcctacgacacgatcatc
atcgacgaggcgcacgagcgcagcctcaacatcgacttcctgctcggctacctgcgccag
ctgctgccgcgccggcccgacctgaaggtgatcgtcacctcggccaccatcgacgccgac
cgcttcgccgcgtacttttcctcgtcgaagggcccggcgccggtgctcatggtgtcgggt
cgcacctaccccgtcgaagtgcgctggcggcctttcgaggaaagccgcgagttcgatctg
aacgacgccatcgccgacggcgtggacgagctgtggcgcggcggccagggtggcgacatc
ctggtcttcctgccgggcgagcgcgagatccgcgaggccgccgaccacctgcgcaagcac
ctggcccaccagccgctgaaccgccatgccgaggtgctgccgctgttcgcgcgcctgagc
caggccgagcaggaccgcatcttccagccgcacggccagcgccgcatcgtgctggccacc
aacgtggcggagacctcgctcacggtgccgggcatccgctacgtcatcgacgccggcacc
gcgcgcgtcaagcgctacagctttcgccagaaggtcgagcagctgcagatcgagcccatc
agccaggcagcggccaaccagcgcgcgggccgctgcggacgggtggccgacggcatctgc
atccgcctctacgacgaggcggacttcaacaaccgcccccgcttcaccgaccccgagatc
ctgcgcagctcgctggccggtgtcatcctgcgcatgaaggccctgcacctgggcgcggtg
gaagacttcgccttcgtcgacgccccgcagcggcgcgccatcgccgacggctaccagctg
ctggccgaactcggcgcggtggacgacgacaaccaactcacgcccaccggccagtcgctc
gcacggctgccgctggacccgcgcgtgggccgcatgatcctggccgcgcgcgagcaccac
gcgctggacgaggtgctggtcatcgccgccgcgctcagcgtgcaggacgtgcgcgaccgg
cccatcgacaagcaggcccaggccgaccaggcgcacgccaagttcgacgacgagaagagc
gaattcaccggcacgctcaagctctggaagtggctggaggacagccgtggcggccacggg
caggcgcacaagctcagccaccgccaatacgagaacctgctgcgcgagaacttcatcaac
gtgcgccgcgtgcgcgagtggcgcgacacccacagccagttgcacaccgtggtgggcgag
cagggttggaagcccaacaccacgccggccagctacgagcagctgcacagcgccatgctc
agcggcctgctcggcaacctgggcgtcaagagcgaaaccgaggactggtacctcggcgcg
cgcggcatcaaattccaccgccaccccggcgcccatctcagcaagaagcccggccgctgg
atcgtctgcgccgaactggtggagaccacgcgcctgttcgggcgtggcatcgcggccatc
gagcccgcctgggtggagcgcgtgggcgcgcacctgctcaagaagcagctgctggacccg
cactgggaaaagaaggccgcgcgcgtgtcggcgctggagcgcgccacgctctatggcctg
gtgatctaccacaaccgccgcgccgactatggccgcatcgacccgaccggcgcgcgcgag
atcttcatccgcgaggccctggtgcagggcgagtgggacacgaagctgcccttcctggcc
gccaaccagaaactggtgcgccaggtgatggagctggagcacaagtcgcgccggcaggac
gtgctggtggacgacgaggtcatctacgcctggtacgacgaacaggtcccggccgagctg
tgcaacggcgccgccttcgagcgctggtacgcccaggccgcgcgcgagaaccccaagttg
ctgttcctcacgcgcgaggacctcatgcgccacgaggccgccggcatcacggcccaggcc
ttcccgcgcaccgtgcgcctgggcggcgtggactgcgccgcggcctacctgcacgagccc
ggcgatccgcgcgacggcctctcggtcacggtgcccatctacgcgctcaaccaggtgagc
gaggagcgcatcgactggttggtgcccggcatgctcaaggacaaggtactggccctgctc
aaaaccttgcaccagcgcccgcgctcgcgcttggtgccgctgccggccacggccgagcgc
ttcaccgaggccttgtgcgcgcccgaggccttcgcccagggcaacttcctcgacgccgtg
ctcaagcgggtgcgcgcggcgacccagctcgacatcgtgcgcaacgacctcaaggccgac
cagctgccggcgcacctcttcatgcacctgcgcgtggtggacgagcacggccgccagctg
ggccaggggcgcagcctggccgcgctcaaggccgagctggggtcgcaggcgcgcggtgcc
ttccaggccctggcggcgctcaaggtgccggcggccgtgccggcgccggcgggtgcttcg
ccaggcgcgccatcgccggccctggcgggccaggccacgcgcgtggccaaggccgcgccg
ccggccgcgcctgcggtggacgccagccagcgccacacccgctgggacttcggcgagctg
cccgagctgctggagatccgccgcggcggccagaccctgatcggctttccggcgctggtg
gacgacggcgacgcggtgcgcatcgaggtcttcgacgagcccgaactggcgcaggcgcgc
caccgcgagggcctgcgccgcctggtggcgctgcagatcaaggacgcgctgaagtacctg
gagaaaaacatccccggcctgcaggccatgggcgcggccttcatgggcgtggacaaggag
cgcggcggcggcacgctggaagagctgcgccagcagctcctggagctggcgctggaccgc
gccttcctgcaggagccgctgccggccgatgccaaggccttcgagcagcgcgtggccgac
gggcgtgggcggctcaacctcatcgccgccgagatcgcgcgctcggccggcgccatcctc
accgaattcgccgccgcccagcgcaagctgaaagacgccaagccgcccgccgacgtggcc
gccgacatcgcccagcagttgcagcgcctggtggggcggcgttttctggtcgagacgccg
cacgcgcagctgcagcatttgccgcgttacctgaaggccgtgcaactgcggctggacaag
cagcgcggcgaccccgcgcgcgacgccgcgcgcctggccgagctcaagccgcaggaccag
cgctactggcgcctggtggccgagcgcaagggcgtgcaggaccctcgcctgcaggagctg
cgctggctgctggaagagctgcgcgtgagcttcttcgcccaggaactgcgcacgccgcag
ccggtgagcctgaagcggctcgacaaggcctgggcccagctgcaggcctga
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