Hydrogenophaga sp. YM1: JNX00_15425
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Entry
JNX00_15425 CDS
T10285
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hyy Hydrogenophaga sp. YM1
Pathway
hyy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JNX00_15425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyy03019
]
JNX00_15425
Enzymes [BR:
hyy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JNX00_15425
Messenger RNA biogenesis [BR:
hyy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JNX00_15425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QRR33041
LinkDB
All DBs
Position
3282512..3284239
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AA seq
575 aa
AA seq
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MTFEELNLAPAIVQAVHEHGYHTPTPIQVEAVPAVLAGRDLLAGAQTGTGKTAAFTLPML
QRLSQGQRPTNRFGGIGIRALVLTPTRELAAQVEESVRVYGKHVNLTSAVVFGGVGMNPQ
IDAMKRGVDILVATPGRLLDLQQQGFLDLSAVQILVLDEADRMLDMGFIHDVKKVLALLP
QSKQSLLFSATFSDEIRDLAQGLLKDPQHIQVTPRNTTVQRITQVIHPVGRGKKKSLLVH
IIQLHNWSQVLVFTRTKFGANNVADYLNKNGITAMALHGNKSQGARTQALAGFKSGEIRA
LVATDIAARGIDIDELPHVVNYDIPNICEDYVHRIGRTGRAGREGQAVNLVSLDEEGFMM
EIERFTKQQIPVEMFAEYMPEPGEKAEPIAMGRQTLWGGAGKPPSRDVMAAAAKAARQEM
VQRIREKKSNEGQGQGQGRGGRGQGDGQPRGQGQGQKAKGPRPQGNGQGGQHHGQGQPRQ
RPPRGDRPPRAEGEEGYERQPGPNAHLGSLRIREPRPRQANPNGQPDPLRTGIDAMRTSN
RFKKKNNKKGGGGGGQRGEGNVDPLRTNYGRIGNN
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgaagaattgaacctggccccggccatcgtgcaagccgtgcacgagcacggg
taccacacgcccacccccatccaggtggaggccgtccccgccgtgctggcgggccgcgac
ctgctcgccggcgcccagaccggcaccggcaagaccgccgccttcacgctgcccatgctg
cagcgcctctcccagggccagcgcccgaccaaccgcttcggcggcatcggcatccgcgcc
ctggtgctcacgcccacgcgcgaactcgccgcccaggtcgaggaatcggtgcgcgtctac
ggcaagcacgtgaacctgacctccgccgtggtgttcggcggcgtgggcatgaacccccag
atcgacgccatgaagcgcggcgtggacatcctggtggccacgccgggccgcctgctcgac
ctgcagcagcagggcttcctcgacctgtcggccgtgcagatcctcgtgctcgacgaggcc
gaccgcatgctcgacatgggcttcatccacgacgtgaagaaggtgctcgccctgctgccg
cagagcaagcagagcctgctgttctccgccaccttcagcgacgaaatccgtgacctcgcc
cagggcctgctgaaggacccgcagcacatccaggtcacgccgcgcaacaccacggtgcag
cgcatcacccaggtgatccaccccgtgggccggggcaagaagaagtcgctgctggtgcac
atcatccagttgcacaactggagccaggtgctggtcttcacccgcaccaagtttggcgcc
aacaacgtggccgactacctcaacaagaacggcatcacggccatggcgctgcacggcaac
aagagccagggcgcgcgcacccaggcgctggctggcttcaagagcggcgagatccgtgcc
ctggtggccaccgacatcgccgcgcgcggcatcgacatcgatgagctgccgcacgtcgtc
aactacgacatccccaacatctgcgaagactacgtgcaccgcatcggccgcaccggccgc
gcgggccgcgaaggccaggcggtcaacctcgtgagcctggacgaagaaggcttcatgatg
gagatcgagcgcttcaccaagcagcagatcccggtggagatgttcgccgagtacatgccc
gagcccggcgagaaggccgagcccatcgccatgggccgccagaccctctggggcggcgcg
ggcaagccgcccagccgcgacgtgatggccgccgcggccaaggccgcgcgccaggagatg
gtgcagcgcatccgcgagaagaagtccaacgaaggccagggccagggccaaggccggggt
ggccgcggccagggtgatggtcagccgcgtggccagggccagggtcagaaagccaagggc
ccgcgcccgcagggcaacggccagggcggtcagcaccacggccagggccagccgcgccag
cgcccgccgcgcggcgatcgtccgccgcgcgccgaaggcgaggaaggctacgagcgccag
ccaggccccaacgcccacctgggcagcctgcgcatccgcgagccgcgcccacgccaggcc
aacccgaacggccagcccgatccgctgcgcaccggcatcgacgccatgcgcaccagcaac
cgcttcaagaagaagaacaacaagaagggtggcggcggtggcggccagcgcggcgaaggc
aacgtcgatccgctgcgcaccaactacggccgcatcggcaacaactaa
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