Hydrogenophaga sp. YM1: JNX00_16345
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Entry
JNX00_16345 CDS
T10285
Symbol
mutM
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
hyy Hydrogenophaga sp. YM1
Pathway
hyy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JNX00_16345 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyy03400
]
JNX00_16345 (mutM)
Enzymes [BR:
hyy01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
JNX00_16345 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
JNX00_16345 (mutM)
DNA repair and recombination proteins [BR:
hyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
JNX00_16345 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
QRR33208
LinkDB
All DBs
Position
complement(3470533..3471348)
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AA seq
271 aa
AA seq
DB search
MPELPEVEVTRRSFADRIAGASVRAARLGKPLRWPLGVAPEALVGQRVRSVGRRGKYLLV
EMDAGWLLVHLGMSGSLQFAPALPPPGPHDHFELDTSQGLLRLHDPRRFGAVVHVPSLDH
ARAVQLLGGLGVEPLEAGFDPVRFHQALRRRRAPIKQVLLAGDIVVGVGNIYASEALFSA
GIRPTTRADRISGPRAARLHAAIVQVLQRALAVGGSTLRDFVSADGQSGYFQLDTMVYDR
AGQPCRQCATAIRTIRQGQRSTYFCPLCQAR
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaattgcccgaagtcgaggtcacccgacgcagctttgccgaccgcatcgccggc
gcctccgtgcgcgccgcccggttgggcaagccgctgcgctggccgctgggcgtggcgccc
gaggcgctggtggggcagcgcgtgcgctcggtcgggcggcgcggcaagtacctgctggtg
gagatggacgccggctggctcctggtgcacctgggcatgtcgggcagcctgcagttcgcg
ccggcgctgccgccccccggcccgcacgaccacttcgagctcgacaccagccagggcttg
ctgcggctgcacgacccgcggcgttttggcgcggtggttcacgtgccttcgctggaccac
gcccgcgcggtccagctgctgggcgggctgggcgtggagccgctggaggccggcttcgac
cccgtgcgcttccatcaggccttgcgccggcggcgcgcacccatcaagcaggtgctgctg
gcgggggacatcgtggtcggcgtgggcaacatctacgccagcgaggcgctgttcagcgcc
ggcatccggccgaccacgcgggccgatcgcatcagcggcccgcgcgccgcgcggctgcac
gcggccatcgtccaggtgctgcagcgcgccctggccgtgggcgggagcaccctgcgcgac
ttcgtcagcgccgatggccagagcggctacttccagctcgacaccatggtctacgaccgc
gccggccagccctgccgccagtgcgcgacggcgatccggaccattcgccagggccaacgt
tcgacctacttttgcccgctctgccaggcccgctga
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