KEGG   Hymenobacter sp. PAMC 26628: AXW84_09910
Entry
AXW84_09910       CDS       T04961                                 
Name
(GenBank) DNA-binding protein
  KO
K19036  ATP-dependent RNA/DNA helicase IGHMBP2 [EC:5.6.2.5 5.6.2.3]
Organism
hyz  Hymenobacter sp. PAMC 26628
Brite
KEGG Orthology (KO) [BR:hyz00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:hyz03009]
    AXW84_09910
   03012 Translation factors [BR:hyz03012]
    AXW84_09910
Enzymes [BR:hyz01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     AXW84_09910
    5.6.2.5  RNA 5'-3' helicase
     AXW84_09910
Ribosome biogenesis [BR:hyz03009]
 Eukaryotic type
  Other ribosome biogenesis factors
   AXW84_09910
Translation factors [BR:hyz03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    AXW84_09910
SSDB
Motif
Pfam: AAA_11 AAA_12 AAA_30 AAA_19 Viral_helicase1 UvrD-helicase DEAD ResIII nSTAND3 Helicase_RecD AAA_16 AAA_22 SLFN-g3_helicase PhoH HEM4 PIF1 T2SSE AAA_25 SMUBP-2_HCS1_1B Flavi_DEAD Radial_spoke_3 Fasciclin UvrD_C_2 AAA AAA_5 DAP3 ATPase VKGC_lumenal_dom AAA_24 Zot AAA_7 NPHP3_N Herpes_ori_bp cobW
Other DBs
NCBI-ProteinID: AMJ65708
UniProt: A0A126PA24
LinkDB
Position
2257927..2259912
AA seq 661 aa
MTETTLPPTDPYAIEKELRQVQALMKLEQQEDLVQFKLKNAKASIQERQQRGLTWYPVTI
TQEDIGFGGKVVLELERPAGQQGLHLFQVGKNASLFGNVPGRAATDRPTLNGVITSVRRN
KLLLATTKEDLPDWVTEGHKLGIDLTFDEVSYREMDYALGKVMGAYGDRLAELRDILLGA
KPARFRAEKPDDIFYPSPLNDSQQAAVRHVLAAHDVAIVHGPPGTGKTTTLVQAILETIR
RERRVLVCAPSNTAVDLLTEKLAERGVNVIRMGNPSRVSDLLLEHTLDAQVMAHKSYNEL
RSMRQTAEQYRETASKYVRNFGYEEMQQRRMLKEEAKMLHQQADDLERYITEDLLEQVQV
ITCTLVGASNRNIRHLTYETVFIDEAAQALEPGCWIPISKAQRVVLAGDHHQLPPTVKSE
KAGALRETLFEKAIKRQPDAARMLTVQYRMHEQIMQFSSDEFYDGKLTAHNTVRHAGLED
YDLRFAPDLPVEFLDTAGFGFTEITIPESRSTANPEEADLLLKRLAQLLEPYDPADHEED
LLSIGVIAPYRAQINYLKDAVEENDELNGLMAHRMLSIGTVDSFQGQERDIIAISLTRSN
SQGEIGFLSDVRRMNVGMTRARRKLLLVGDSSTLSANPFFKRLLAYIESIGGYRTAWEMQ
D
NT seq 1986 nt   +upstreamnt  +downstreamnt
ttgaccgaaactaccctcccccccaccgacccctacgccatcgagaaagagctccgccag
gtgcaggccctgatgaagctggagcagcaggaagacctggtgcaattcaagctcaaaaac
gccaaggccagcatccaggagcgccagcagcggggcctcacctggtacccggtcaccatc
acccaggaagacattggcttcggcggcaaggtggtgctggagctggagcgccccgccggg
cagcagggcctgcacttgtttcaggtgggcaaaaacgcctcgctgtttggcaacgtgccc
gggcgcgcggctaccgaccgccccaccctgaacggcgtgattaccagcgtgcggcgcaac
aagctgctgctggccaccaccaaggaagacctgcccgactgggtgaccgagggccacaag
ctcggcatcgacctcacctttgacgaggtgagctaccgcgagatggactacgccctgggc
aaggtgatgggcgcctacggcgaccgcctggccgagctgcgcgacatcctgctcggagcc
aagcccgcccgcttccgcgccgaaaagcccgacgacattttctaccccagcccgctcaac
gactcacagcaggcggccgtgcgccacgtgctggcggcccacgacgtggccattgtgcat
ggcccccccggcacgggcaaaaccaccacgctggtgcaggccattttggaaaccatccgg
cgcgagcggcgggtgcttgtctgcgcgcccagcaacacggcggtagacttgctgaccgaa
aagctggccgagcgcggtgtcaatgtcatccgcatgggcaacccctcgcgggtgtcggac
ctgctgctcgagcacacgcttgatgcgcaggtgatggcccacaagagctacaacgagctg
cgcagcatgcgccaaaccgccgagcagtaccgcgaaacggccagcaagtacgtgcgcaac
ttcggctacgaggagatgcagcagcgccggatgctgaaggaggaagccaaaatgctgcac
cagcaggccgacgacttagagcgctacatcaccgaggacttgctggagcaggtgcaggtg
ataacgtgcacgctggtaggcgcttccaaccgcaacatccgccacctcacctacgaaacg
gtgttcatcgacgaggcggcccaggccctggagccgggctgctggattcccatcagcaag
gcccagcgcgtggtgctggccggcgaccaccaccagctgccgcccaccgtgaagagcgaa
aaggccggggccctgcgcgaaacgctgttcgaaaaggccatcaagcgccagcccgatgcc
gcccgcatgctgacggtgcagtaccgcatgcacgaacaaatcatgcagttcagctccgac
gagttttacgacggcaagctgacggcccacaataccgtgcgccacgccggcctggaggac
tacgacctgcgcttcgcccccgacctgccggtggaattcctcgacacggccggcttcggc
ttcaccgaaatcaccatccccgagagccgctccacggccaaccccgaggaggccgacttg
ctgctcaagcgcctggcccagctgctggagccctacgaccccgccgaccacgaggaggac
ctgctcagcatcggcgtgattgctccgtaccgcgcccaaattaactatttaaaggacgcg
gtggaggaaaacgacgagctgaacggcctcatggcccaccggatgctgagcatcggcacc
gtcgattcgttccagggccaggagcgcgacatcatcgccattagcctcacgcgcagcaac
tcgcagggcgaaatcggcttcctgagcgacgtgcgccgcatgaacgtgggcatgacccgc
gcccgccgcaagctgctgctcgtgggcgactccagcacgctcagcgccaacccgttcttc
aagcgcctgctggcctacatcgaaagcatcggcggctaccgcacggcctgggaaatgcag
gattaa

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