Hymenobacter sp. PAMC 26628: AXW84_09960
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Entry
AXW84_09960 CDS
T04961
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hyz
Hymenobacter sp. PAMC 26628
Brite
KEGG Orthology (KO) [BR:
hyz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hyz03032
]
AXW84_09960
03400 DNA repair and recombination proteins [BR:
hyz03400
]
AXW84_09960
Enzymes [BR:
hyz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AXW84_09960
DNA replication proteins [BR:
hyz03032
]
Prokaryotic type
DNA Topoisomerases
AXW84_09960
DNA repair and recombination proteins [BR:
hyz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AXW84_09960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AMJ65716
UniProt:
A0A126P9B9
LinkDB
All DBs
Position
complement(2271580..2272692)
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AA seq
370 aa
AA seq
DB search
MPAAAAPTARPKTRKKHLVPTAHELYKDPAQQAAQAGLHYATDAAPGYARKAGRGGKFSY
YDAQGHKVTDVAVLERIAGFVIPPAWTDVWVAQDARAHLQVTGHDTVGRKQYRYHPAWDE
IRSLTKFSRLHAFGEKLPALRQQLKHDLARPALSREQVVALVISLIDQSFIRVGNEEYAK
KNKSYGLTTLHDEHVSFKGDAVRFAFVGKKGVAHDVTLRDRRLARLVRKCQEIPGQHLFQ
YYTADGHRHALESGDVNGYLHEHTGLALSAKDFRTWGGTVKMVECLENMLTEEPDLAPEK
VIRKAVKDVASGLGNTPTVCSKYYIHPQVVTLFKSGELIDYLRTHDATPAPQDPLSPTER
LVLKMLAATA
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccgccgctgcgcccaccgcccgtcctaaaacccgcaagaagcacctcgtgccc
actgcccacgagctctacaaagaccccgcccagcaggccgcccaagccgggctgcactac
gccaccgacgcggcgcccggctacgcccgcaaggctggccggggcggtaaattcagctac
tacgacgcccagggccacaaagtgaccgacgtcgcggtgcttgagcgcatcgccggcttc
gtcattccgccggcctggacggacgtgtgggtggcccaggacgcccgggcccacttgcag
gtgacgggccacgacacggtgggccgcaagcagtaccgctaccacccggcctgggacgaa
atccgcagcctgaccaagttttcgcgcctgcacgcctttggtgagaagctgcccgccctg
cgccagcagctcaagcacgatttggcccgcccggcgctgagccgcgagcaggtggtggcc
ctggtaatttccctcatcgaccagtcgttcatccgggtgggcaacgaggagtatgcgaag
aagaacaagagctacggccttaccacgctgcacgacgagcacgtgagcttcaagggcgac
gccgtgcgctttgccttcgtgggcaaaaagggcgtggcccacgacgtgacgctgcgcgac
cgccgcctggcccgcctggtgcgcaagtgccaggaaatccccggccagcacctgttccag
tactacaccgccgatggccaccgccacgccctggagtcgggcgacgtgaatggctacttg
cacgagcacactggcctggccctctccgccaaggacttccgcacctggggcggaaccgtg
aaaatggtggaatgcctagaaaacatgctgaccgaagagcccgacttggcccctgaaaaa
gtaatccgcaaggccgtgaaggacgtggccagcggcctgggcaacacgcccaccgtgtgc
tcgaagtactacatccatccgcaggtggttacgctctttaaatcgggcgaactcattgac
tacctgcgcacccacgacgctacccccgcgcctcaggatccgctttctcctactgagcgc
ttggtgctgaaaatgctggccgccaccgcgtaa
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