Hymenobacter sp. PAMC 26628: AXW84_12110
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Entry
AXW84_12110 CDS
T04961
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hyz
Hymenobacter sp. PAMC 26628
Pathway
hyz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXW84_12110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyz03019
]
AXW84_12110
03009 Ribosome biogenesis [BR:
hyz03009
]
AXW84_12110
Enzymes [BR:
hyz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AXW84_12110
Messenger RNA biogenesis [BR:
hyz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AXW84_12110
Ribosome biogenesis [BR:
hyz03009
]
Prokaryotic type
rRNA helicases
AXW84_12110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_30
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AMJ66091
UniProt:
A0A126PDC4
LinkDB
All DBs
Position
complement(2745352..2747394)
Genome browser
AA seq
680 aa
AA seq
DB search
MEPEKTQDKTAEKIVVKFEDLNLSAEVQRAITEMGYEEASAIQAAAIPVLLAGKDVIGQA
QTGTGKTAAFSIPAIEGVDGDSRDVQVLVLCPTRELAVQVSGEIQKLGKYKRGLAVVPIY
GGSSYDRQFRALERGVQIVIGTPGRVMDHIERGTLKLDKTTKIILDEADEMLDMGFREDI
EFVLSKMPADRQTVFFSATMSKPIMELTKKYQRDPQVVKVNHQTMTVTNIEQSYFEVRGP
QKKDVLTRVLDMYNLKSTIVFANTKRMVDEIVADLQAKGYFAEGLHGDMGQQQRQNTLDK
FRKNTLEVLVATDVAARGIDVDNVEAVFNYDLPADEEYYVHRIGRTGRAGKSGKAFTFVS
GRDIYKLRDIMRFTKAQIKLEQVPSFADVSEVKTTLFLNQIKEIVEKGNLEKYVGRVQRL
LDQSEEMTSLDIAAALLKMTMKEDKRAEQSLDASRTAGVVRTGFTRLFISMGKKDRIHPR
DIVDLISESTNLQGGKVGDIALYDKFSFVEVPSEFADEIVGQLGRSSIQGQPVSFSIATP
VQDAAAKEEGNTRGPGSFGGGERRGGFGGGERREGGFGGNRGGSSFGGNRGGGSYGERRE
GGSGGGYKGNRDGGSSYGNRAGTGDRPAYGDRPAYGDRPKPYGNRAGAGDRPAYGSKPYG
NKGGARDNDARPPRTESFDE
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggaacccgaaaaaacccaagacaaaactgcggagaagatcgtagtgaaatttgaagac
ctgaacctctcggccgaggtgcagcgcgccatcaccgagatgggctatgaggaagcttcg
gccatccaggccgccgccatccccgtgctactcgccggcaaagacgttatcggccaggcc
caaacaggcactggcaaaaccgccgctttctcgattcccgctattgagggcgtggatggc
gattcgcgcgatgtgcaggtgctcgtgctttgccccacccgcgaactcgcggtgcaggta
tcgggcgaaatccagaaactgggcaaatacaagcgcggcctggccgtggtgccgatttac
ggcggcagcagctacgaccgccagttccgggccctggagcgcggcgtgcaaatcgtcatc
ggcacccccggccgcgtaatggaccacatcgagcgcggcacgctgaagctcgacaagacc
acaaaaatcatcctcgacgaagccgacgagatgctcgacatgggcttccgcgaggacatc
gagttcgtgttaagcaagatgccagctgaccgccagacggtgttcttctcggccacgatg
agtaagcccatcatggagttgaccaagaaataccagcgcgacccgcaggtagtgaaggtg
aaccaccagacgatgacggtgaccaacatcgagcagagctacttcgaggtgcggggcccc
cagaaaaaggacgtgctcacgcgcgtcctcgacatgtacaacctgaaatcaaccatcgta
ttcgctaacacgaagcgcatggtggacgagattgtggccgacctgcaagccaaaggctac
tttgccgaaggcctgcacggcgacatgggccagcagcagcgccagaacacactcgataaa
ttccgcaaaaacacgctggaagtactagtggctaccgacgtagccgcccgcggcattgat
gtggataacgtggaggccgtgttcaactacgacctgcccgccgacgaagaatactacgtg
caccgcatcggccgcacgggccgtgctggcaagtcgggcaaggccttcaccttcgtgagt
ggccgcgacatctacaagctgcgcgacatcatgcgcttcaccaaagcccagatcaaactg
gagcaagtgccgtcgtttgctgacgtgtcggaagtgaaaaccacgctgttcctgaaccag
atcaaggagattgtggagaagggcaacctggagaaatacgtgggccgcgtgcagcgcctg
ctcgatcagagcgaggaaatgacctcgctagacatcgctgccgcgctgctgaagatgacc
atgaaggaagacaagcgggccgagcaaagcctcgacgccagccgtacagctggggtggtg
cgcacgggcttcacccgcctgttcatctcgatgggcaagaaagaccggattcacccccgc
gacatcgtggacctgatttcggagagcaccaacctgcaaggcggcaaagtgggcgacatc
gccctctacgacaagttcagcttcgtagaagtacccagcgagtttgccgacgagattgtg
ggccaactgggccgcagcagcatccaaggccagccagtgagcttcagcatcgccacgccc
gtgcaggacgcggcggctaaggaagagggcaacacccggggccccggcagcttcggcggc
ggcgagcgccgcggcggctttggtggtggcgagcgccgcgaaggtggcttcggtggcaac
cgcggcggcagcagcttcggcggcaaccgcggtggtggcagctacggcgagcgccgcgaa
ggcggttcgggcggtggctacaaaggcaaccgcgacggcggcagcagctacggcaaccgc
gctggcaccggcgaccggcctgcttacggtgaccgtccggcctacggcgaccgccccaag
ccctacggcaaccgcgctggtgccggcgaccgcccagcctacggcagcaagccctacggt
aacaaaggcggcgcccgtgacaacgacgcccgcccgccccgcaccgaaagtttcgacgag
tag
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