Hymenobacter sp. PAMC 26628: AXW84_13285
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Entry
AXW84_13285 CDS
T04961
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hyz
Hymenobacter sp. PAMC 26628
Brite
KEGG Orthology (KO) [BR:
hyz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hyz03016
]
AXW84_13285
Enzymes [BR:
hyz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AXW84_13285
Transfer RNA biogenesis [BR:
hyz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AXW84_13285
Prokaryotic type
tRNA splicing ligases
AXW84_13285
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AMJ66301
LinkDB
All DBs
Position
complement(3032349..3033749)
Genome browser
AA seq
466 aa
AA seq
DB search
MASQLRGNDLRQLGFPEGRAIGLALAQLQRKEHKRLTQTEQTELLVRVLANPTNFLADLA
WSHTAAALLPVPSRHIALAERKPYATFGAEHIEAGAIHQMETAMKLPITLAGALMPDAHH
GYGLPIGGVLATDNAVIPYAVGVDIGCRMALSVFDLPAKYLTQRTQEVGKLLLDHTRFGS
GRAWERGQRLDHAVLSDDAFRAVPFLKNKLDKAAEQLGTSGSGNHFVEFGLVDITDPAND
LGLPVGQYVGLLSHSGSRGLGASTANHYTALAMEQCMLPAEAKHLAWLGLDTEAGQEYWA
AMNLAGAYASACHDQIHRRLAKALGEKPLAKVENHHNFAWQETLADGRAAVVHRKGATPA
GAGVLGIIPGSMTAPGFIVRGRGAAASLASASHGAGRLMSRTRAKAELGEAEVRQHLAAQ
GVTLHGGGLDEAPMAYKNIHQVMASQHELVDVLGSFTPKIVRMDGA
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atggcttctcaattacgcggcaacgacttgcggcaactcgggtttcccgagggccgggcc
attggcctggcgctggcgcagctgcaacgcaaagaacacaagcgcctcacccaaaccgaa
caaacagaattgctcgtccgggtgctggccaaccccaccaatttcctggccgacctggcc
tggagccacaccgccgcggcgctgctgccggttccctcgcgccacatcgccctggccgag
cgcaagccctacgccacgttcggcgccgagcacatcgaggccggggccattcaccagatg
gaaacggccatgaagctgcccatcaccctcgccggggccctcatgcccgacgcccaccac
ggctacggcctgcccatcggcggcgtgctggccaccgacaacgccgtgattccctacgcc
gtgggcgtggacattggctgccgcatggcgctgtcggtgttcgacctgccggccaagtac
ctcacccagcgcacccaggaggtgggcaagctcttgctcgaccacacccggttcggctcg
ggccgggcctgggagcggggccagcgcctcgaccacgccgtgctgtccgacgacgccttt
cgggccgtgccgttcctgaaaaacaagctcgacaaagccgccgagcagctcggcacttcg
ggctcaggcaaccacttcgtggagttcggcctagtcgatatcaccgacccggccaacgac
ctcggcctgcccgtaggccagtacgtgggcctgctctcgcactccggctcgcggggcctg
ggcgccagcaccgccaaccactacacggccctggccatggagcagtgcatgttgcccgcc
gaagccaagcacctcgcctggctgggcctcgacaccgaagccggccaggagtactgggcc
gccatgaacctggccggcgcctacgcctcggcctgccacgaccagattcaccggcgcctg
gccaaagccttgggcgaaaagcccctggcaaaagtggaaaaccaccacaacttcgcctgg
caggaaaccctggccgatggccgcgcggccgtggtgcaccgcaagggcgccacgccggcc
ggagcgggcgtgctcggcatcatccccggctcgatgacggcccccggcttcatcgtgcgg
ggccggggcgcggcggcctcgctggcctctgcctcgcacggggctggccggctcatgtcg
cgcacccgggccaaggccgaactgggcgaagccgaggtgcgccagcacctagccgcgcaa
ggcgtaaccctgcacggcggcggactcgacgaggctccaatggcctacaaaaacatccac
caagtaatggccagccagcacgagttggtagacgtgctcggctcgttcacacccaaaatc
gtccggatggacggggcgtaa
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