Helicoverpa zea (corn earworm): 124631159
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Entry
124631159 CDS
T08400
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hze
Helicoverpa zea (corn earworm)
Brite
KEGG Orthology (KO) [BR:
hze00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hze03016
]
124631159
Enzymes [BR:
hze01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
124631159
Transfer RNA biogenesis [BR:
hze03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
124631159
Prokaryotic type
tRNA splicing ligases
124631159
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF6471
ScdA_N
DUF5077
Motif
Other DBs
NCBI-GeneID:
124631159
NCBI-ProteinID:
XP_047021333
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All DBs
Position
6:6920790..6923728
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AA seq
506 aa
AA seq
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MVVRQYNEELKYLEKINPYCWRIKKGFQPNMNVEGVFYVNSTLEKLMLDELKNSCRPGMT
GGFLPGVKQIANVAALPGIVGRSIGLPDVHSGYGFAIGNMAAFDMADPQSIVSPGGVGFD
INCGVRLLRTNLHEKDVQPIKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KYAAGKMGIERLGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDQIETNDRQLACARIN
SVEGQDYLKAMAAAGNFAWVNRSSMTFLTRQAFAKQFKMAPDDLDMHVIYDVSHNIAKME
EHVVDGKVKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTHQGM
TETFGSTCHGAGRALSRAKSRRNIDYKEVLTKLEELGISIRVASPKLVMEESPESYKNVT
DVVNTCHAAGISKKTVKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtgcgtcagtacaatgaagaattgaagtatcttgaaaagatcaatccatattgc
tggagaatcaaaaagggttttcagcctaacatgaacgtggaaggagttttttacgtaaat
tcgactcttgaaaagttaatgttagacgagttgaagaattcctgtagaccaggaatgact
ggaggttttctcccgggtgtgaagcaaattgcgaatgtagcggctttaccgggtatcgtg
ggccggtctattggtttgccggatgtacactctggatatggtttcgctatagggaatatg
gcagcttttgatatggctgatccacagtcaattgtctctcctgggggtgtgggttttgat
attaactgtggagtccgcctattaagaaccaatctccatgagaaagatgtccagcctatt
aaggagcaacttgcacagagtttatttgaccacatcccagttggtgtggggtctaaggga
ataattcctatgaatgccagagacctagaagaagctctagaaatgggaatggactggtct
ctcagggagggttatgtctgggctgaagacaaggaacattgtgaggagtatgggcgtatg
ttaaatgctgatccttccaaagtcagtctgcgtgccaaaaagagaggtttaccacagctg
ggtaccttgggtgctggtaaccattatgcagagattcaagtagtagatgaaatctatgat
aaatatgctgctggaaaaatgggtattgaacgacttgggcaagtgtgtgtaatgattcat
tctggaagtagagggtttggccatcaagtagctactgatgctcttgttcagatggagaaa
gctatgaaaagagatcagattgagacaaatgataggcagctggcttgtgctagaatcaat
tctgttgaaggtcaagactatctcaaggcaatggcagcagctggtaactttgcgtgggtc
aatagaagttcaatgacattcttgacccgccaagcatttgccaagcaatttaaaatggca
cctgatgacctggatatgcatgtcatatatgatgtatcccataacattgcaaagatggaa
gaacatgttgtagatggaaaagttaagaccttattagtacacagaaagggttctacaaga
gcttttcctccacaccacccactcatacctgtggattatcagttgactggtcagccagtc
ctgattggtggaactatgggcacatgcagttatgtattgactggcactcaccagggcatg
actgaaacatttggctctacctgtcatggagctggtcgagctttatcccgggcaaagtcg
aggaggaacatagattacaaagaagttctcacaaaattagaggaactgggtatttctatt
agagttgcatcaccaaagttggttatggaagagtctcctgaatcttacaagaacgtcaca
gacgtagttaatacttgccatgccgctggcatcagtaagaaaactgtgaagttacgacct
attgcagttatcaaaggctga
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