Helicoverpa zea (corn earworm): 124631382
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Entry
124631382 CDS
T08400
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
hze
Helicoverpa zea (corn earworm)
Pathway
hze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124631382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hze03019
]
124631382
Enzymes [BR:
hze01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
124631382
Messenger RNA biogenesis [BR:
hze03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124631382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
DUF4618
Motif
Other DBs
NCBI-GeneID:
124631382
NCBI-ProteinID:
XP_047021707
LinkDB
All DBs
Position
6:10251067..10263968
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AA seq
528 aa
AA seq
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MEITRNNFLDELDTIKRDLSKSCFVGFDAEFTALLSTECFKHRLFDTSEERYDKLKNKVS
NMIMTQVGLTMFQYNRDLDSYTATGYTFHLCPQVFGDIDQSFIFQASTLNFLCKHNFDFN
KFTYEGLPYLSQVEEARVRQSLKDKSLFNDLSRMLTMEEEKQLQQYQSQVSKWLKRSQED
TLYLDVENPVLRYITHIEVRMSFPEVLTTDSLGNSKKILIYRDKDVEGAHSAPIAILEDN
LMSHLLGFSQIISLLSESQKPIVGHNIFLDTVLLHNQFIGPLPNRYKDFKNNIHTMFPNV
YDTKYISHEMSMKLSYHEVWKSNALQDLYEFFSEGKCKKLQNGVNLIKLSRPFNVKQSYH
EAGWDSYCTGYCFIRLGHWTACENRGSYRPVGPVETLSALAPYCNKVNIIRGAVQYMNLA
EDDPPRHRPGLLHLRALAKRTINVAEVASELATFGSLDIKPYGSRTALIAASSRHTTQVI
LKQYKNSKVYRIAPYSVYRHSTAGRMAIWSGALITGSLVLYLLHRKLK
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggagataacaaggaataactttctagatgaactagatacaataaaaagagatttatcg
aaatcctgttttgttggtttcgatgctgaatttacagctctcttatcaacagaatgcttt
aaacacagattattcgacacaagtgaagaacggtatgacaaattaaagaacaaagtgagc
aacatgataatgacgcaggtcggactaaccatgttccagtataacagagacctggactcg
tacacggctactggctacacgttccatctgtgcccgcaagtctttggggatattgaccag
tctttcatatttcaagcatcaacactgaattttctgtgtaaacataattttgattttaat
aagttcacatatgaaggcctgccgtacttgagtcaagtggaggaagcccgagtgaggcag
agcctcaaagacaaatccctgttcaatgacctctccagaatgctcacgatggaggaagag
aaacagctgcagcagtaccaatctcaagtttccaaatggctgaaaagaagtcaagaagac
acattatacctggacgtggaaaacccagtgctccgatatataacccacattgaggtccgg
atgagtttccccgaggtcctcactaccgatagcttaggtaatagtaagaagatactgata
taccgagataaagacgtagaaggtgcacatagcgctccaatagcaatactagaagacaac
ctcatgagccacttactaggattctctcaaatcatttcactactctccgaatcacagaaa
cctattgtaggacacaacatattcctagacaccgtattattacacaaccaattcattggg
ccactcccaaacagatacaaagactttaaaaataacattcacacaatgttccccaatgta
tatgatactaagtacatatcacacgaaatgtctatgaaactcagctaccatgaggtgtgg
aaatcaaacgcattacaagatttatacgagttcttttcggagggaaaatgcaagaagtta
cagaacggcgtgaatttaatcaaactgagcagacctttcaatgttaagcagtcgtatcat
gaagctgggtgggactcttattgtacagggtactgtttcatccgcctcgggcactggaca
gcgtgtgagaaccgcggcagctaccgccctgtgggacccgtcgagacgttatctgcgctc
gcaccctactgcaacaaggttaacattattcgcggcgctgtgcagtatatgaatttagcg
gaagacgatccgccgcgtcatcgaccggggttattgcatttgagggctcttgcaaagaga
actattaatgtggcagaggtggcgtctgaactcgcgaccttcggatctttagacattaag
ccttatggaagcaggactgctctcatagctgctagcagtcggcatactacacaagtgatc
ctgaagcaatacaagaacagcaaagtgtacagaatagctccgtacagcgtgtaccgacac
tccacggccgggaggatggctatatggagtggagccctaatcactggcagcttggtgcta
tacttactacacagaaaacttaaatag
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