Helicoverpa zea (corn earworm): 124633708
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Entry
124633708 CDS
T08400
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
hze
Helicoverpa zea (corn earworm)
Pathway
hze03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
124633708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hze03400
]
124633708
DNA repair and recombination proteins [BR:
hze03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
124633708
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
124633708
NCBI-ProteinID:
XP_047024972
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Position
10:complement(6646045..6668834)
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AA seq
917 aa
AA seq
DB search
MSSLQPIQALSLDSVQQQAFIKYFHSLPEKPATTVRIFDRNDYYSVHGADASTAAREVFS
TVANIKKMGLEPNKLDYLVLSKGNFEILIKKLLLVRRYRVEIYVAEGSVKGSDWSLKYKG
SPGYLSQLEEILGEGLGASDDTTPCLIAVHIKTDAVTKGRLLGVACVTAGDYQMSVTEFT
DDDLLTELETITVQMAPSECLVPISEHDDYKALKKVMERTNVTVTKLKKSEFSTEGLIQD
LNRLLKFKENQQQDANAFPETSKEVAMTCLAAAIKYSALLNDSTNFGRFRISTIQADCFL
HLDSAALSALNVFPELGDTSHAPSRSLYGLLDRCRTQQGKRLLAQWLRQPLRDINLINER
LDIVELLKSNSQLRLQLHEDHLRRIPDLQALARRLTRKKANLQDCYRIYQAINRLPSLLR
CLAEAENPTVHSSITEPISELNEDLGKFLEMIETTVDMEAVDRGDFLVKPSFDEQLQSLS
EQLEQMQSSADKELNKAAKDLGLDAGKTIKLESNPQNGFCLRVTKKEEQTLRGNKKYTVI
DAVKGGVRFKTKALENITEEYTTIKSNYEREQDKVVAEIVGIAAGYSECLFCLSHILSRL
DVLVSFSVAAASAPHSAYIRPTITEDLNELVLKELRHPCLEVAEGVSYIPNDVVFKRGTG
VMHIVTGANMGGKSTWMRSCGVAVVLAHAGCPIPAAAAKIPRLKALAARIGASDAEAKGH
STFMREMIDTAAILRTATPDSLVLIDELGRGTSTYEGCGIAWAIAEELATKSQCFCLFAT
HYQELTRLASTHPGVIINSHAEASVVNGQLLLLHRIAPGPAMHSLGLHVAKLADLPDSII
EYAEAKQAQLEINLFDVEAAVQSEETTEGHKLIVEFLRKCKQIQESSPSDGLMMEEITKL
KQELLQTQNKYVESLMA
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcgctacagcctattcaggcattgagcttagattctgttcagcagcaggctttc
atcaaatattttcactctttaccagagaaacccgcgacaacagtgaggatttttgaccgc
aatgactactacagcgtccatggagctgacgcatcgaccgcagccagggaagtttttagc
actgttgccaatatcaagaagatgggccttgaacctaataagctcgactacctcgtactt
tccaaaggaaacttcgagattctcatcaagaaacttttgctggtcaggcgttatagagta
gaaatatacgtagctgaaggctccgtgaaaggcagcgattggtcactaaaatacaaagga
tcgcctggctacttgtcacaattggaagaaattctgggcgagggattaggagcttctgac
gataccacaccctgtttgatagcagtgcatatcaagaccgatgctgttacaaaaggccga
ctcctaggcgtagcttgcgtgacagccggtgactatcagatgtcagtgactgagttcact
gacgatgatttgctaacggagttggaaactatcacggttcagatggcgccttctgaatgc
cttgtgcctattagtgaacatgacgattacaaagcattaaaaaaagtgatggaaagaaca
aacgtgactgtaactaaattgaagaagagtgagttctcaactgaagggcttatacaagat
ttgaatcgactgctgaaattcaaagagaatcagcagcaggatgcgaacgcatttccagag
acaagcaaagaggttgccatgacctgcttggcagcagctattaaatactcggcactactc
aatgatagcaccaactttggaaggtttcgtatatcgacaattcaagctgattgtttccta
cacttggactccgcagcattatcagctctcaacgtgtttcctgaactcggagacacatcg
catgcgccttctagaagtttgtacgggttgctcgatagatgccgcacacaacaggggaaa
cgtcttctagcccaatggctacgccaaccgctccgagacattaacttaattaacgaacgc
ttagacattgtcgagttactaaagtccaactcccaacttcgtttacaattgcacgaagac
catttgagacggatacctgacttgcaagccttggcaagaaggcttacaagaaagaaggcc
aacttacaagactgttatagaatatatcaggctatcaacagactgccatctttactgcgc
tgtttagccgaagcggagaacccaacagttcactcatcgattactgaaccaatctcagag
ctgaatgaagatctcggcaagttcctcgagatgatagaaactaccgttgacatggaagct
gttgacagaggtgatttcctcgtaaagccatcgttcgacgagcaactacaaagcctaagt
gaacagttggaacaaatgcaatcttcagctgacaaagaactaaacaaggccgctaaagac
ctaggcctcgatgcaggcaagactatcaagttagagagtaacccacagaatggattctgt
ttgagagtaacaaagaaagaagagcaaactttacgcggaaataagaaatataccgttata
gatgctgtgaagggaggcgtgagattcaaaactaaagcgttagagaatatcactgaagaa
tataccacgatcaaaagtaattatgagcgggaacaagataaagtagttgctgagatagtt
ggtattgcagcgggctactcagaatgtttattctgtctatcacacatattgtctcggctc
gacgtgttagtatcgttctcagtggcggcggcttcagcaccacattccgcgtacattcga
cccactattactgaagatcttaatgaattggtactgaaggaattaagacatccttgcttg
gaagtcgctgaaggcgtctcttatatacctaatgatgttgtgtttaaaagaggaacaggc
gtaatgcacatagtaacaggcgctaacatgggcggcaagtcaacgtggatgcgttcctgc
ggcgtcgccgtcgtgctcgcccatgccgggtgtcccatacccgccgcagcagcgaagata
cctagactgaaggctctggccgcacgtatcggtgcgtctgatgccgaggctaagggacac
agcacgtttatgagagaaatgattgatactgctgctatactcaggacagcaacaccagac
tcgctggtcttgatcgatgagttgggacgaggaacttccacttatgaaggctgcggtata
gcttgggccattgctgaggaactagcaacaaaaagccaatgcttctgtctgttcgcgacc
cactatcaagagttaacccggttagccagcacccacccgggcgtcatcatcaactctcac
gccgaagcctcggtcgtcaacggccagttgttgctgctgcatcgcatcgctcccggacca
gccatgcattccttaggactgcacgtcgcgaagctagctgatctccctgattctattatt
gagtatgctgaagctaaacaggcgcaacttgaaatcaacttgttcgacgtagaagcagct
gtccaatctgaagaaacaacggagggtcacaaattaattgtagagttcttacgtaagtgt
aaacaaatacaagaaagttcgccatccgatggcttgatgatggaggaaataacgaaacta
aaacaagaattgttgcaaactcaaaataaatacgtggaatctcttatggcataa
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