Helicoverpa zea (corn earworm): 124635009
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Entry
124635009 CDS
T08400
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
hze
Helicoverpa zea (corn earworm)
Pathway
hze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124635009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hze03021
]
124635009
03041 Spliceosome [BR:
hze03041
]
124635009
03036 Chromosome and associated proteins [BR:
hze03036
]
124635009
Transcription machinery [BR:
hze03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
124635009
Spliceosome [BR:
hze03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
124635009
Complex B
124635009
Complex C
U2 SnRNP specific factors
124635009
Chromosome and associated proteins [BR:
hze03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
124635009
TFTC complex
124635009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Fungal_virus_P2_N
Motif
Other DBs
NCBI-GeneID:
124635009
NCBI-ProteinID:
XP_047026699
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All DBs
Position
12:5152076..5159951
Genome browser
AA seq
1218 aa
AA seq
DB search
MYLYNLTLQGSSSITHAVHGNFSGTKQQEIVISRGKTLELLRPDPNTGKVHTLMKVEIFG
VIRSMMSFRLTGGTKDYIVIGSDSGRIVILEYIPKKNILEKVHQETFGKSGCRRIVPGQY
LAIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSPLEAHKSNTLVYHMVGVDVGFENP
MFACLEIDYEEADADPSGEAAQKTQQTLTFYELDLGLNHVVRKYSEPLEEHANFLITVPG
GNDGPSGVLICSENYLTYKNLGDQHDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITIETDEDMVTEIKLKYFDTVPVATAMCVLKTGFLFVACEFGNHYLYQ
IAHLGDEDDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDELDSLSPILACRVADLAAEDT
PQVYLACGRGPRSSLRALRHGLEVAEMAVSELPGSPNAVWTVRRHKDEEYDSYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCHALGADALVQVYPDGIRHIRADKRVNEWKAPG
KKSIVKCAVNQRQVVIALTGGELVYFEMDPTGQLNEYTERKKLSSDVSCMALGSVATGEQ
RAWFLAVGLNDNTVRIISLDPSDCLAPRSMQALPAGAESLCIVEQPFESGAKSALQLNIG
LSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVSSRTWLGYHYQNR
FHLTPLSYECLEYAAGFSSEQCAEGIVAISSNTLRILALEKLGAVFNQTYLPLEYTPRKF
VINSDNNNIIILETDHNSYTEEMKNQRRVQMAQEMREAAAGGGPEEQQLANEMADAFLSD
TLPENIFSSPKAGAGMWASQIRVVDMGVSGGQPTTLFKLPLEQNEAAVSGCIVRWAAHAE
HAQAHLVVGVAKDMILSPRSCTEGSLHVYKIYGSTGKLELVHKTPVDEYPGALAPFNGRL
LAGVGRMLRLYDIGRRKLLRKCENRHIPNLIADIKTIGQRIFASDVQESVFCLKYKKREN
QLIIFADDTNPRWITNSCILDYDTVAMSDKFGNVAVMRLPQSVTDDVDEDPTGNKALWDR
GLLNGASQKGDVVVNFHVGETVTTLQRATLIPGGSEALLYATVSGSLGVLLPFTSREDHD
FFQHLEMHMRSENPPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLEPAKQKAIAGDLER
TPAEVSKKLEDIRTRYAF
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacaatctgactttgcaaggctcatcttcaattacacatgccgttcacggt
aatttctccgggacgaagcagcaggagatagtgatttcacgtgggaagacgttggaactg
cttaggcccgaccccaacaccgggaaagtgcatacgctgatgaaagtggagattttcggc
gttatcagatcaatgatgtcatttcggctcaccggaggcactaaagattatattgtgata
ggatcggattctggccgcattgtgatattagagtatattccaaagaagaacattctggaa
aaagttcatcaagaaacatttggcaaatctggatgccgcaggattgtgcccggccagtac
ttggctatagatcccaaaggcagagctgttatgattggtgcaattgaaaagcagaagctt
gtgtacatattgaacagagatgctgaagccaggctcacaatttcttctcccctggaagct
cacaagtccaacacattggtttaccacatggttggtgtagacgttggctttgaaaaccca
atgtttgcttgtctggagattgactatgaagaggcagatgcagatccttcaggtgaagca
gcacaaaagacacaacagacactcacattctatgagttagatttaggtttgaaccatgtt
gtcagaaagtactctgaacctcttgaggaacatgcaaacttcctcatcacagtgccagga
ggtaatgatggtccctcaggagtactcatttgctcggaaaactatctcacatataaaaac
ttgggtgaccaacatgatatccgatgtcccatccctcgacggcgaaatgacttggatgat
cctgagagagggatgatatttgtctgttcagctacccacaagaccaagtcaatgttcttc
ttcttagcacagactgaacagggagatatattcaaaattactattgagactgatgaagac
atggtcactgagattaagttgaagtactttgacactgtacctgtggctactgcaatgtgt
gtgctcaagactggcttcctatttgtggcctgtgaatttggcaaccactacctgtaccaa
attgctcacttgggtgatgaagatgatgaaccagaattcagttcagccatgcctttggag
gaaggagacacatttttctttgctccaaggccactaaggaatctggtgcttgtagatgaa
ctggactcgctgtcgcccattcttgcttgtcgtgtggccgatttggctgctgaagacact
cctcaagtgtatctggcttgtggcagaggaccaagatcatcactgagagctctcagacat
ggtttagaggttgctgagatggctgtgtctgagttgcctggttctcccaatgctgtatgg
accgtcaggcgacacaaggatgaggagtatgattcttacatcattgtgtcgttcgtaaat
gccacgcttgtactatctatcggtgaaacggtagaagaagtgacggactctgggttcctg
ggcaccacgcccaccctcagctgtcacgcgctcggcgccgacgccctcgttcaagtgtac
ccagacggcatccggcacatccgcgccgataagcgtgtcaatgaatggaaggctcctggg
aagaaatccattgtcaaatgcgcagttaatcagagacaagtagttattgctctgacagga
ggagaattagtctattttgaaatggaccctactggtcaactaaatgaatacactgagagg
aagaagttgtcgtcagatgtgtcatgcatggcgttgggatcagtagcgactggtgaacaa
agagcctggttcttagctgttggcctgaatgacaacactgtcaggatcatctcattagac
ccatctgactgtctcgccccacgttccatgcaagctttgccagccggcgccgaatctctt
tgtattgtggaacaaccattcgagtctggagctaaatctgccttacagttgaacattggc
ttgagcaatggagtattactgagaacaaccttagattccgtcagtggggatttggctgac
acaagaacaaggtacttgggatctcggccggtgaagttgttcaaagttcgcgtgcaagcg
gctgaggccgtgcttgctgtatcgtcaagaacttggctgggataccactatcagaatcgc
ttccacctcacgcctctgtcgtatgaatgtctggagtatgccgctggttttagctctgaa
cagtgcgccgaaggtatcgtagccatctcttcaaacaccctcagaattttggcgttagaa
aaactaggcgcagtcttcaatcagacctacctgccacttgaatacaccccgaggaaattc
gtcattaactctgataacaacaacatcatcattctggagactgatcacaactcttacact
gaggaaatgaaaaaccaaaggagggttcaaatggcacaagaaatgagagaagctgccgcg
ggtggcggccctgaagaacagcaacttgctaatgaaatggctgatgcgttcctctcagat
acactgcctgaaaatatattctcgtcacccaaagctggagcaggtatgtgggcatctcaa
atccgtgtggttgatatgggggtgagcggaggtcagccgactacattgttcaagttgccg
ctggaacagaacgaggcggcggtgtcgggctgcatcgtgcggtgggcggctcacgccgaa
cacgcacaggcccacttagtcgttggcgtcgctaaagacatgattttgtcaccaagatcc
tgcacagaaggcagcttacatgtttataagatttatggtagtactgggaagttagagtta
gttcacaaaacacctgtagatgaatatcctggcgccctagcaccgttcaatggcagactg
ttggcaggagttgggcgcatgttaagattatacgacatcggcagacgaaagctactgcgc
aagtgcgaaaaccgacacattccaaaccttatagccgacatcaaaactatcggccaaagg
atattcgcatcagatgtacaagaatctgttttctgtctcaagtacaaaaagcgagagaat
cagctgatcatatttgctgatgacaccaatccaagatggatcacaaatagctgtatactg
gattatgatactgtcgccatgtctgataagtttggcaatgtagctgtgatgagactgcca
cagtcagtaactgatgatgttgatgaagatcctacagggaacaaagcactctgggataga
ggacttctgaatggagcatcccagaaaggcgatgttgtggtcaacttccacgttggagag
actgtaactacgctacaaagagctacactcattcctggcggttctgaagccttattgtac
gcgaccgtcagcggctctctcggcgttctgcttcccttcacatctagagaagatcacgac
ttcttccagcatctggaaatgcatatgaggagtgagaacccgccactgtgtggccgggat
cacttgtcttttaggagctattattacccagtaaagaatgtgatagacggcgacctgtgc
gagcagttcaactcgctggagccggccaagcagaaggcaatcgccggcgacttggagaga
acgcccgccgaagtgtccaaaaagttggaagacattagaactagatacgcgttttaa
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integrated database retrieval system