Helicoverpa zea (corn earworm): 124635266
Help
Entry
124635266 CDS
T08400
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
hze
Helicoverpa zea (corn earworm)
Pathway
hze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124635266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hze03041
]
124635266
Enzymes [BR:
hze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124635266
Spliceosome [BR:
hze03041
]
Complex C
Other components
Step II factors
124635266
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_19
AAA_22
nSTAND3
nSTAND_NTPase5
T2SSE
DinB
DUF8506
Sigma54_activ_2
Sigma54_activat
ABC_tran
AAA_16
ATPase
AAA_30
Flavi_DEAD
PhoH
AAA_7
cobW
SRP54
Motif
Other DBs
NCBI-GeneID:
124635266
NCBI-ProteinID:
XP_047027089
LinkDB
All DBs
Position
12:1571472..1691392
Genome browser
AA seq
1195 aa
AA seq
DB search
MSEDDENLHRLAGSSGDAPGGLIIKKKEPPGEFQFAKPSLLGLDKLAAAKRKQNRLISFQ
DDNNDDEVEDNKTDASGSKERKYRKHNEETPTYTGGISEQARERMLERLQKREKEAKEKG
VHHSTQEEKKSRSKDDEDDRYYRHRYNRRDRDRRRDDRRDDRRDDRRDRDRDRRRDGRDS
DRRDRDSDRRGESSRRSYYEPRFKDEPRTPSMKVLKPTDKTPWDDDDDDKAPLRKSSWDF
PTPLTKESGGDRSQRSDRYGKPMRDYKGRPYENTPRATPHKFASSRRGADIDDSDWEEAE
KKLDRAWYNMGEGEADESDPFAGTSAEYVSRKEEQIEKRRNRKVSAQRQQIDKDNELWER
NRMLTSGVVHAINVNNDLDEENVDRVHLLVHNIVPPFLDGRIVFTKQPEPVIPVKDPTSD
MAMNARKGSALVKAFREQKERRKAQKKHWKLEGTKIGNIMGIQKKEEEMEDGPTKDAYKY
AEHMDNQPQEVESKSDFVKKMTISEQRRFLPVFAVREELLQVIRENSVVIIVGETGSGKT
TQLTQYLHEEGFSRLGMIGCTQPRRVAAMSVAKRVSDEMNTKLGDEVGYAIRFEDCSSPN
TVIKYMTDGILLREGLREPDLDNYCAIIMDEAHERSLSTDMLFGLLREVVARRSDLKLIV
TSATMDSTKFSTFFGNVPTFTIPGRTFPVETFFAKNVCEDYVDGAVKQALQIHLQPEEGD
ILIFMPGQEDIEVTCEVLTERLADLDSAPPLTVLPIYSQLPADLQAKIFQRAPPGQRKCI
VATNIAETSLTVDGIMYVIDSGYCKLKVYNPRIGMDALQIYPVSQANARQRAGRAGRTGP
GKAFCLYTQRQYQHELLASTVPEIQRTNLANTVLLLKSLGVEDLLAFHFMDPPPQDTILN
SMYQLWILGALDGTGSLTPLGRQMAEFPLDPPQCHMLIVSAEMGCSVEVLIIVSMLSVPS
VFYRPQGREEEADSVKEKFQVPESDHLTLLHLYNQWKANNYSGQWCTEHFVHGKAMRKVR
EVRQQLKDIMQQQRLPLVSCGTDWDTVRKCICSAYFQQAARLKGIGEYVNCRTGMPCHLH
PTSALFGLGNSPDYVVYYELMMTTKEYMHCVTAVDGRWLAELGPMFFSVKETGKTNRDKR
KEAAVHLQRMEEEMKQAEQKMAEERKRREEDVPVKQEIATPGLNTPRRTPHRLGL
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaagacgatgaaaacttgcatcgtttggcgggatcttctggtgatgccccgggt
ggcttaatcatcaaaaagaaggaacctccgggggagtttcagttcgccaagccttcgttg
cttggtcttgataaactagcggccgctaaacgcaagcaaaaccggctgatatcgtttcaa
gacgacaataatgatgatgaggttgaggataacaaaactgatgccagtggttcaaaagaa
cgtaaatataggaagcataatgaagaaactcctacttataccggtggtatatcggagcaa
gcgcgggaacgcatgctggagcggttacagaaaagggaaaaagaagcgaaagaaaaaggt
gtacaccactccacacaagaggaaaagaaatcacgttcaaaagatgatgaggatgaccgt
tactaccgtcatcggtacaacaggagggatcgtgaccgaagaagagatgacaggagggat
gatcggagggatgacagaagggacagagatagggatagacggagggacggtagggactca
gatagaagggatagggatagtgacagaagaggagaaagttccagaagaagttattatgaa
cctaggtttaaggatgaaccaaggactcctagcatgaaagtattaaagcctacagacaag
acaccctgggatgatgatgatgatgataaggcgccactccgtaagtccagttgggacttc
ccgacaccactgactaaagagtctggtggtgatcggtcgcagagaagtgatcggtacggc
aaaccaatgagggattataagggacggccgtatgagaatacgccgagagctacaccacat
aaatttgctagttcgcgccgtggtgctgatattgacgattcagactgggaagaggctgaa
aagaaactagatcgagcttggtacaatatgggtgaaggtgaagccgacgaatcagacccc
ttcgcgggtacatcagccgagtacgtgtctcgcaaagaggagcagatagaaaagagacgc
aaccgcaaagtgtccgcccagagacaacagatagacaaggacaatgagctgtgggagagg
aataggatgctcaccagtggtgttgtccatgctattaatgttaataatgatttggatgag
gagaacgtagaccgagtacatttgttggtacacaacatagtgccgccgttcctcgacggt
cgcatcgtcttcaccaagcagcccgaacctgttataccggtaaaagacccaacatcagat
atggcgatgaacgcccgcaaaggttctgcgctagttaaagcgttcagagagcagaaggaa
cgcagaaaagcgcagaaaaaacattggaagttagaaggaactaaaatcggtaatataatg
ggcatacagaagaaagaagaagagatggaggatggaccaacaaaagatgcttacaaatat
gctgagcacatggataatcaacctcaagaagtggaatcgaagtcagacttcgtgaaaaag
atgacgatatctgaacagaggcggttcttaccagtgttcgctgtcagagaagaattactt
caagttattagagaaaatagcgttgtcattattgttggtgagacgggcagcggtaaaact
acgcagctaactcagtatttacacgaagaagggttcagtcgtctcggtatgattggttgt
acgcaacctaggcgagttgccgccatgtccgtcgctaaaagagtgtccgatgaaatgaat
actaagctaggtgacgaagtgggctacgccatccgtttcgaagactgctcatcacccaac
acggtgatcaagtacatgacggacggtatcctgctccgcgagggtctgcgcgagccggac
ctggacaactactgcgccatcatcatggacgaagctcatgagcggtcactgtctaccgat
atgctgttcggattgctgagagaggtggtagcccgacgttccgacctgaagctgatcgtg
acatcagcaaccatggactccacaaagttctccacgttcttcggcaacgtccccacgttc
accatccctggacgtaccttccccgttgagacgttcttcgccaagaatgtctgtgaagac
tacgtggatggtgctgtgaaacaggcgcttcagatacatttgcagcctgaagaaggagat
atcctcatattcatgcctggacaggaagatattgaagtcacttgtgaggttctgacagag
cgtctagcagacttagacagcgctccccccctcacagtgctgccgatatactcgcagctg
ccagctgacctgcaagccaagatcttccagcgagcaccacctggacagaggaagtgtatt
gtcgctactaatattgctgagacatcactgacggtagacggaataatgtacgtgatagat
agtggatactgcaaactgaaggtgtacaacccaaggatcggtatggatgctctacagatc
tacccagtaagtcaggccaacgcgagacagcgagcaggccgcgccggacgcacggggccc
ggcaaggccttctgtctgtacacacagcggcagtaccaacatgagttgttagcctccacc
gtgccggagatacagaggactaatctagctaacactgtgctgttgttgaagagtctagga
gttgaggatctgttagctttccattttatggacccgccgccgcaggacacgatcctaaac
tcgatgtaccaactgtggatcctgggagcgttagacggcacggggtcactgaccccgctg
ggaaggcagatggcggagttcccgctagaccctccgcagtgtcacatgctcatcgtcagc
gcagagatgggctgcagtgttgaagtgcttattattgtatcaatgctgtcagtgccgtca
gtgttctaccggcctcagggtcgcgaggaggaagctgactccgtcaaggagaagttccaa
gtgcccgagtctgatcacctcactctactgcacttgtacaaccagtggaaggctaacaat
tactcaggccaatggtgtaccgagcactttgttcacggcaaggcgatgcgtaaagtacgc
gaagtgcgtcaacagttgaaagacatcatgcaacaacaacgcctgccgctcgtgtcgtgt
ggaactgactgggatactgtccgcaagtgtatctgttcagcctacttccagcaagcagct
cgcctcaaaggcataggggaatacgtgaactgccgcacaggcatgccttgtcaccttcac
ccgacttccgcactgttcggtcttggcaactcacccgactatgtggtctactacgagctg
atgatgaccacgaaggagtacatgcattgtgtgaccgcggtcgatggaagatggttggcc
gagttgggacccatgttcttttctgttaaggagactgggaaaacaaatcgcgacaaacgc
aaagaagcagccgtccacctccaacgaatggaagaagagatgaaacaagccgaacagaag
atggcagaagaacgcaagaggagagaagaagacgttccagttaaacaggagatcgcgacg
ccaggactcaacacgcctaggagaacgccacataggctgggactttga
DBGET
integrated database retrieval system
