Helicoverpa zea (corn earworm): 124635508
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Entry
124635508 CDS
T08400
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
hze
Helicoverpa zea (corn earworm)
Pathway
hze03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hze00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124635508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hze03021
]
124635508
03019 Messenger RNA biogenesis [BR:
hze03019
]
124635508
Transcription machinery [BR:
hze03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124635508
Messenger RNA biogenesis [BR:
hze03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
124635508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_helical
zf_PCFS4
Pcf11_C
Pfc11_Clp1_ID
zf_UBZ
VHS
Motif
Other DBs
NCBI-GeneID:
124635508
NCBI-ProteinID:
XP_047027324
LinkDB
All DBs
Position
13:complement(712869..731889)
Genome browser
AA seq
1688 aa
AA seq
DB search
MSKEVAEEYASSLADLTVNSKPLINMLTILAEENIDHAGVIVETVEKHLEKVHPDIKLPV
LYLVDSIIKNVGGAYTQKFSQSIVNMFTRTFKQVIVDEKIRSQMFKLRETWHDVFPATKL
YQLDVKVNLIDPAWPIQAQPQQSNIHVNPNFLKKSVGATTSTAAAPVPVPVEEDEKMRSI
LAKKEQELLMLQRKKVEMELEHMRRQVEIAEKTVTKKVPIVPPVNNVNSTNSVPAAAPVH
AVAPEVVANIPAKQRLGPPVNKTAGRIAPVSATLLTARRDPRLARHAAAPAAAPAALTAP
TVRAPPAAPVPPVAIVAPAAAIAPNVFDIKPLERVTKRKNVITIDVRPEVEAKPRRRDPR
LDKRDPRRNRQRDERRREDKPEPERIPTPAYVDKLPDPKKISKMPPIPKISKTKRDADVV
TPKRKRDALRAERRRRRDEEAERQAKQPPAAKPAAPVTSPQKEARAAAVTSPRKEARASP
ELVTFKELRNYHKEHYMRRNRQQSDSPEPASVADIVTENKDVDLRVLPAVVNDTKAAAVA
QKRPSTEAVEVKAKKTKLDKFDVLFGNEDVDLRQLPQVDEVNPPPPPSITSSPKSDNKPD
DEAPVPSPKGSPKRDWNEVKKRDDKKTPSKLDLVRAKFAEVTKGKDRLGRPLLFSKSPSV
ERERRRTMSGDDMDLRDNDEQGFVENKKSISIIMSQAKEHFTDGQLDKNQYNTLMYQILQ
INEKLKLKEAKQRESLEISKRKLKAQTLDDNHKVPSPKSSPTERNRFGDIDERITPSVFM
DTPPDSQGMLQDSDMRVNSDGVDGMKPKTLLPLPPGMPMFPPYQQMWRGPRPRGDDFGSR
RFRGPAPPFFRGKFDKRAPRPPFEPRMPMPPLPTPKMGMCQGDYPLPPYERTESPPPLGA
PGFAIPPTDFKVIEYIDQDPFKTIQIDGIPREIRFYGDTAVIMLDWDDPREIKFLPGCRR
VTFDNKDSIVLSFNEGYKQVEIDDQVFDIKFGSPTRELYINGRWYECFFGGQPLGVIIDG
KPRLVHLEGPMPQVDIGKAKRTDLVAGKINLIVNATQMHPVYLDAKVQKILVNGQFLTVR
FVDSLRTVLINEQPFKVEFGDLPKPIVVGSEKYFIRFSALPRNIKPGYIQIANMEGMGLP
LLTQVKKVEDIKEEDTNNMEVDQEPIVRPMKTPSPDNNTESLGLDMLASVMPSSTVPASG
SEYSVAEPLFAKPEKIPGLETPADEKPPVLPGLPILGNINVSDLFAKLVATGIVQVNNDN
KEDSKEEQKEEAKNKPKEDKNVIHRVDFMRPETFRVKQPGLVAKLYGGMQCSGCGARFPP
EHTVRYSQHLDWHFRQNRRDRDSARRAHSRHWHYDLSDWVQYEEVEDLEEREKSWFETGG
STTTTAEATEAPAPVPTATPSAAAPAPARHCCALCGDTFQQFYNEDKEEWHLRNSVRHND
DYYHPLCFDDYKASLTKAEEPSKESSDDVQPIEKTEEAIEIKDVDDTLEEQSDNESVVEV
VEEAKDLDPVEIDEGEEDDVVFKAEPVEQVVVEDDADTDDETAATRAERDRLAEIDFSKV
KVKQEPVDPDDEPIVTAEEETVQARVDNTHATVESSIDGNLQLDAANAPATALPIGGIRI
NISKSLPSFINNNDDKMLEDISADDEPLPPGEEPELEYTLKPALEGVQFSRQPPVTRGNE
LSGLCSIM
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagaagtagcggaagagtacgcgtcgagtttggcggacctaaccgtcaacagc
aagcctctgatcaatatgttgacgatcctcgcggaagagaacatcgaccacgccggggtt
atcgttgaaacagtggaaaagcatttggagaaggtacacccagacatcaagctgcctgta
ctgtatttagttgattccattatcaagaatgttggcggtgcctacacacagaagttttca
cagagcattgtcaatatgtttaccaggacattcaaacaggtaattgttgatgagaaaatc
aggtcacaaatgttcaagttgcgagagacttggcatgatgtgttcccagccacaaagctg
taccaactggatgtgaaagtgaacttgatcgacccagcgtggcctatacaagcgcagccc
cagcagtctaacatccatgtaaatccaaattttctgaaaaagtcggtgggggccactacc
agtactgctgcggctccggtaccggtaccagttgaggaggatgaaaagatgaggagtatc
ctcgccaagaaagagcaagagctcctcatgctgcagagaaagaaggtggaaatggagctc
gagcatatgaggcggcaggtcgagattgctgagaaaactgttactaaaaaggtgccaata
gttcctcccgtgaacaacgtgaactccacaaacagcgtcccggcggccgcgcccgtgcac
gcagtcgcaccagaagttgtcgctaacatacctgctaagcagcggcttggaccgccggtg
aataaaacggcgggacgcatcgctcccgtcagcgccacgctgctcaccgcgcggcgagac
ccgcgcctcgcgcgacacgcggccgcgcccgccgccgcgcccgccgccctcacagcacct
accgtccgcgcgccgcccgccgcgccagtgccgcccgtcgccatcgtcgcacccgccgcc
gccatagcacccaacgtcttcgacatcaaacctctcgagcgcgtcaccaagcgaaagaac
gtcatcaccatagacgtgcgccccgaggtcgaagccaaaccccgccgccgagacccgcgc
ctcgacaagcgggacccgcgccgcaacaggcagcgcgatgagcgacgccgggaggacaag
cccgagcctgagcgcatccccacgcccgcctacgttgacaaactgcctgatcccaaaaag
atcagcaaaatgccgccaatacctaaaatctcgaagacaaagagagacgcagatgtcgtg
acgcctaagaggaagcgagatgcgttacgtgctgagcgcagacggcggcgcgacgaggag
gcggagaggcaggccaagcagccgcccgcggccaagccggcggcgcccgtcacgtcaccg
cagaaggaggctcgcgcggccgccgtgacgtcaccgcgcaaggaggcccgcgcctcgccc
gagctggtgacgttcaaggagctccgcaactaccacaaggagcactacatgcgccgcaac
cgccaacagtccgacagcccggaacccgcaagtgttgctgatatcgtgacagagaataag
gatgtagatcttagggttttgcctgcggtggtcaatgataccaaagcggccgccgtggct
cagaagcgaccttccactgaggctgtggaagttaaggccaagaaaactaaattggacaag
tttgatgtactgttcggcaacgaagatgtggatctccgtcagcttccccaagtggacgaa
gtcaatcctccaccgcccccatccatcacgtcatccccgaagtctgacaacaagcctgat
gacgaagcccctgtaccgtcacccaaaggatcccccaaaagggactggaacgaagtcaaa
aagagggatgataagaaaactccttcgaaattggacctcgtgagggccaagtttgccgaa
gtgacgaaaggcaaagatagactgggcaggccgttgctgttcagtaaatcacctagtgta
gaaagagaaaggcgacgcacaatgagcggtgacgatatggacttgagagataatgacgag
caaggttttgtcgaaaacaagaaatctatctccatcatcatgtcgcaagctaaagaacat
ttcacagacggacagttagacaaaaatcagtacaatacacttatgtatcaaatactgcag
atcaacgagaagctcaaactaaaagaggctaaacagagggagtccctcgaaatatctaaa
agaaagctcaaagcacaaactcttgacgataaccacaaagtacccagtcccaagtcttca
ccgactgaacggaataggttcggagatatcgacgagaggatcacaccatctgtattcatg
gacacacctccagacagtcagggaatgttacaagactccgacatgagagtgaactcagac
ggcgtcgacggcatgaagccaaagactctgttacctctccctcctggcatgccaatgttc
ccgccataccaacagatgtggcgaggaccgagaccgagaggcgacgacttcggatccaga
aggtttagaggtcccgcgccaccattcttcagagggaagtttgacaaaagagctccgagg
ccgccattcgaacctcggatgccaatgcctcctctacccacccctaaaatgggcatgtgt
caaggagattatcccttaccaccttatgaaagaaccgagtctccgccgcctttgggagct
ccgggcttcgccatcccacccacagacttcaaagttattgagtacatagaccaggatcca
ttcaaaactatccaaattgacggcattcccagagagatcaggttctacggtgacacagct
gtcataatgctggactgggacgatcctagggaaattaaattcttgcccggatgtaggaga
gtgacgtttgataacaaagactccatagtattatctttcaatgaaggctataagcaagta
gagatagatgaccaagtgttcgatataaagttcggttcgccgactagagaattgtacata
aatggcaggtggtatgaatgcttctttggtggccaacctttaggcgtaattatagatggg
aagccgagactagtacatttagagggtcccatgccccaagtggatattggtaaagctaaa
cgcacggacttggtcgctggtaaaatcaaccttattgtgaacgcgacacagatgcaccca
gtttacttagatgccaaggtgcaaaagatcttggtcaacggtcaatttttgaccgtacgc
ttcgtcgattcgctgagaacagttttgattaacgagcaaccattcaaagtggagtttggt
gatcttccgaaacctatagtagttggtagtgagaagtatttcattagattctctgcgtta
cctcgtaatatcaagcctggatatatccagatagcgaatatggaaggcatgggcttgcct
ttacttactcaagtgaagaaagttgaagatattaaggaagaggacacaaataatatggag
gttgatcaggagccaatcgtcaggccgatgaagactcccagccctgataacaacaccgag
agtttaggactcgacatgctagccagcgtaatgccttcaagtacagtaccagcatcaggc
tccgagtacagcgttgccgaaccactgttcgccaaacctgaaaaaatccctggcctcgaa
acacccgctgacgagaaaccaccagtcttaccaggcctaccaatattaggaaatattaac
gttagcgatttgttcgctaagttggtagctactggtatagttcaagtgaataatgacaat
aaagaggatagtaaggaagaacagaaggaagaagctaagaataaaccgaaagaggacaag
aatgttatacatagagttgactttatgaggcctgagactttcagagtaaaacaacccggt
ctagtcgccaaactgtacggcggcatgcaatgctcaggctgcggcgcccgcttcccgccg
gagcacacggtgcggtactcgcagcacctggactggcacttccgccagaacagacgcgac
cgcgactccgcccgccgcgcacactcgcgccactggcactacgacctgtccgactgggtg
cagtacgaggaggtcgaggatctggaggagagagaaaagagctggttcgaaacaggcggc
agcacaaccaccacagcagaagcgacggaagcccccgcacccgtgccgaccgcgacgccg
tccgccgccgcgcccgcgcccgcgcgccactgctgcgcgctgtgcggggacaccttccag
cagttctacaacgaggacaaggaggagtggcatctcaggaactctgtgcggcataacgat
gactactatcatcccttgtgctttgatgattataaggcttctctaacaaaagccgaggag
ccgtccaaagagtcatcagacgacgtgcagcccatagagaagacagaagaagccatagag
atcaaggacgtggacgacacattagaagaacagtcggacaacgagtctgttgtcgaagtt
gtcgaggaggctaaggatttggatcctgtcgaaatagacgaaggcgaggaagacgacgtg
gtcttcaaagctgagccagtggaacaagtggtggtggaagacgacgccgacacagacgac
gagaccgccgccacacgcgccgaacgagacaggctcgctgaaatagacttcagcaaggtc
aaggtcaaacaggagcccgttgatcctgacgacgaaccaatagtaacagcggaagaggaa
acagtccaagctcgagtagacaacacacacgctaccgtcgagtcttccatcgacggcaac
ttacagctcgacgccgccaacgcgcccgccacggccctgcccatcgggggcattcgcatc
aacatatctaagtccctaccttcctttatcaacaacaatgatgataaaatgctcgaagac
atcagtgctgatgatgagccgctaccgcctggtgaagaaccagagctagagtatacgtta
aaaccggcgctagaaggcgttcagttcagtagacagccaccggtgacgagaggcaatgag
ttgtctgggttatgctcaattatgtaa
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integrated database retrieval system
