Helicoverpa zea (corn earworm): 124636808
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Entry
124636808 CDS
T08400
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
hze
Helicoverpa zea (corn earworm)
Pathway
hze03013
Nucleocytoplasmic transport
hze03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hze00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124636808
03015 mRNA surveillance pathway
124636808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hze03019
]
124636808
Enzymes [BR:
hze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124636808
5.6.2.5 RNA 5'-3' helicase
124636808
Messenger RNA biogenesis [BR:
hze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124636808
mRNA cycle factors
Common to processing body (P body) and stress granule
124636808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
AAA_16
ATPase
AAA_22
SRP54
nSTAND3
AAA_5
UvrD_C_2
AAA_7
Motif
Other DBs
NCBI-GeneID:
124636808
NCBI-ProteinID:
XP_047028926
LinkDB
All DBs
Position
15:6669931..6677405
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AA seq
1037 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLTSSNQ
VNGLGRSDLSSKISNVTNAIAELQFEEEDEALYSKELPDHACKYCGIHDPATVVMCNICN
KWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAKA
DSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSEAEQMRARQVTPQQ
IGRLEELWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRLK
ESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKAWSGVGHVI
KVPDNYGDDVGLELKSGAGAPLDCTSNFVVDFIWKSTSFDRMQLALRKFAVDDSSVSGYI
YRRLLGHEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVT
SATIVYQLVRQNSGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLAL
HEQARALGSADSELRKLTRLKEEAGELSAADERRYRALRRAAERRLLDAADVVCTTCVGA
GDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPWP
RPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQR
SYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRLN
VALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKLV
NAQNPGSHFMSTSMFDAREAMVPGSVYDRARPLRDPLAYVGPERAALLHAPVPPAAFAAH
RGLPRPPLGPARAARRRPPRLSQEPLSQQPPLSLSQGASQPDFSQESAAPDCPSQPDGLL
SQDSTYQGGFRARCSQY
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggacgcttatggcccgagctcacaaacactcacgtttttggacactgaggaa
gcggatcttattggggctgatactcagggctccgaattcgaatttactgacttcaccctt
ccttcgcaaagccaaacacaggcttcccaacatgaccatgggttgacatcttcaaatcag
gtgaatggtttgggtcgttccgatttatcatccaaaatttctaatgtgactaatgccatc
gcggaattgcaatttgaggaagaagatgaggccttgtacagcaaggagttgcctgaccac
gcgtgcaagtactgtggcatacatgatccggccactgttgtcatgtgtaatatttgcaac
aagtggttctgcaatggacgaggcaacacgtcaggctcgcacattatcaaccatttagtg
cgtgccaagcacaaggaagccgccttgcacagagatggtccactcggagagacattgctt
gaatgctactcttgcggtgccaggaatgtgttcgttcttggcttcataccagctaaggcg
gactctgttgttgtgttgctatgcagacaaccctgtgcggctcaaagctccttgaaggat
atgaactgggatcaggagcaatggaaaccattgatatctgaccgagcctttctatcctgg
ctggtgaaagtaccttctgaggctgagcagatgagagctcgtcaggtgactccgcagcaa
attggccgcctggaagaattgtggcgtgacaatgtagatgctaccttccaagatttggag
aaacctggcgtcgatgaggaacctcatcaagtgttgttgagatacgaagatggttaccaa
taccaaaacatcttcggccctctagtgaagcttgaagctgattatgacaagaggctgaaa
gagtctcaaactcaggagggcattgaagttcgctgggacgtggggctaaacaagaagacc
attgcatactttacgctcgctaaaactgatagcgatatgaaactgatgcatggtgatgag
ctgagattgagatacgtaggcgagctgcataaagcgtggtcgggcgtcggtcacgtgatc
aaggtgccggataactacggcgatgacgtcgggttagaactcaagagcggcgccggcgca
cctctagactgcacctccaacttcgtagtagattttatatggaagagcacttcctttgac
aggatgcaactagctctgcgcaagtttgccgtagatgattcatcagtgtcaggctacatt
taccgccgtctgctaggccatgaagttgaagaggtcctattccgtgttcatctgccgaag
cacttcagcgctcctaacttgcctgacctcaaccgatctcaggtatacgccgtaaagcac
gctctgcagcgtcctctttcgctcatccaaggcccgccggggacaggtaaaactgtgacc
tcagctacgattgtgtaccaactcgttaggcagaatagtggcccggtactcgtctgtgct
ccatcaaacactgctgtcgaccaactcacggaaaagattcatagaaccggcctgaaagtc
gtcagactttgcgccaaatctcgtgaagccatggaatcttctgtttcgttcttggctctg
cacgagcaagctagagctttaggatctgcagacagcgagctgaggaaactgaccagattg
aaggaagaagctggagaattatccgccgctgatgagaggaggtaccgtgcgttacgtcgc
gccgctgagcgacgtctgctcgacgcggctgacgtcgtgtgcaccacgtgcgtcggcgcc
ggggacccgcgcgtcgcccgcatgcgcttccagtccatcctcatcgacgaaggcatgcag
tctactgaacctgagtgcatggtgccggttgtgctgggcgccagacagctgatcctcgtc
ggagatcactgccagcttggcccggtagtcatgtgcaagaaagcggctaaggccggactc
agccagagtcttttcgagcgtttggttgtccttggcatccgtccattccgccttgaagtc
caatatcgtatgcaccctgaactatctcgtttcccttctgatttcttctatgaggggtct
ctgcaaaacggagtgagtgcagaggaacgtcgtttgcataaaattgacttcccctggcca
agacctgaccgccctatgttcttctatgtaacgcaaggacaagaggagattgctggatca
ggtacatcttatttgaatagaactgaagccgctaatgtggaaaagctaacaacaagattt
ttgaaagcgggcgtgcgtcccgagcagatcggaatcataacaccttacgagggacaacga
tcgtatctcgtacagcacatgcagtaccaaggtagcttacatgctaaactttaccaagag
atagaagtagccagtgtagatgccttccagggcagagaaaaggatataatcatcatgtcc
tgtgtacgatccaatgaacatcaaggaatcggatttttgagcgacccacgtcgtctcaac
gtagccctcacccgcgccaagtatgggcttatcgtggtcggcaaccctaaggtattaagt
aaacagccattgtggaaccacttgctagctttctacaaagaacgtagagttctcaccgag
ggaccactttccaacctaaaagagtctgcgattcaattcgcgaaaccaaagaagttggtg
aatgctcaaaacccgggttcacacttcatgtcgacgtcgatgttcgacgcgcgcgaggcg
atggtgccgggctcggtgtacgaccgcgcgcggccgctgcgcgacccgctggcctacgtg
ggccccgagcgcgccgcgctgctgcacgcgcccgtgccgcccgccgccttcgccgcgcac
cgcggcctgccgcgcccgccgctcgggcccgcccgcgccgcccgccgccgcccgccgcgc
ctgtcgcaggagccgctgtcgcagcagccgccgctgtcgctgtcgcagggcgcgtcgcag
ccggacttcagccaggagtcggcggcgcccgattgcccgtcgcagcccgacgggctgctg
tcgcaggactccacgtaccagggcgggttccgagcgcgctgcagccagtactga
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