Helicoverpa zea (corn earworm): 124637757
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Entry
124637757 CDS
T08400
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
hze
Helicoverpa zea (corn earworm)
Pathway
hze03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hze00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124637757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hze03021
]
124637757
Enzymes [BR:
hze01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124637757
Transcription machinery [BR:
hze03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
124637757
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
SURF2
DUF3369
Motif
Other DBs
NCBI-GeneID:
124637757
NCBI-ProteinID:
XP_047030350
LinkDB
All DBs
Position
16:complement(10067556..10073138)
Genome browser
AA seq
1659 aa
AA seq
DB search
MSFKSTYAASTSGLTSVDPEYVQFLMFSDEDVRKLSVSKITNVQSFDAIGNPTKGGLYDS
ALGPLRDRNETCGTCNNVLLHCPGHFGHIELPLVVVNPMFIKNIYSLFRVSCLKCFKIQM
DDRLKFILKLQLELVDAGHITAALDLDNYVGDITSGKENSPEKPNKVIRKYQKLLKKRDA
VVETFQNKNVDKLRAKFINQYFRVINTAKKCAYCACKLIKVTTSENKIMYNLSADGAEKG
SKGIKILMPDEIKRYCTSIAQNDEDILKYCFPVLKYSPTQPVTNAFFMDVVPVLPPNVRP
CNVLRGELVEHPQTNVYKAILQNAFAARAVLHVLSSSDQQKTIDSLDQLPRQAYESVQGK
TAAEKLHTVWQELQKSINNLLNCEGQGLASQGLKQIIEKKTGLIRMHMMGKRVNFAARSV
ITPDPNVDIDEIGIPDAFAMKLTYPIPVTEWNVDELRKMVINGPNKHPGAEKIEMENGRV
ISIAADSILKRKSLAKRLLTPDEFKASGLKVVHRHLVNGDVLILNRQPSLHKPSMMAHRA
RILKGEKTLRLHYANCKSYNADFDGDEMNAHFPQNEIARSEAYNIMSVTKQYLVPKDGTP
LSGLIQDHVISGVRMSLRGTFFTKSDYQQLVFQALPNHKGPIKLLPPTILKPLVLWSGKQ
VLSTIIINTTPKGKPCLTLIGKAKISSKAWQKIAPRPWKAGGTPFNNPNTMTEAEVVIRK
GELLSGVLDKTHYGATPYGLVHCMYELYGGDSSSALLSSFSKVFTFYLQWIGFTLGVKDI
LVVEEADKKRDDYICLVRNAGKAAAVKATDLPADVDDEKLKETIEILHTKDPKFRTNLDR
QYKTMLDSYTNNINTACLSEGLLEKFPYNNLQLMVQSGAKGSTVNTMQISCLLGQIELEG
KRPPLMISGRSLPSFPPHDVSPRAGGFIDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTS
RSGYLQRCLIKHLESLAISYDHTVRDSDNSVIQFAYGEDGLDVLKCQFLREDQFPFLDIN
SSAVIGEAVIDKLKEDEDLKDVAKANKSLKKWKKKYGSPFEKVRTSGFVQFSAVEKKQIE
LDDLPTDRTRDPFYWELEKKWRAMDEEERQQYTRKKCPDPIPSKMSPEYKFGVINEQLDS
IVQNYLKKRHSSAYDEHTPKDRFVDVMNAKYLESMAAPGEPVGLLAAQSIGEPSTQMTLN
TFHFAGRGDMNVTLGIPRLREILMTASAKLKTPNMDIPFRDDIPDLTKKAEKLRQKLNRV
TVADVLEKIDVQCQIVIRPERQLKTTMRYQFLPHSQYKTQYTVKPPQIIKHMQNKFFQEM
FSTVTKQAKAVSGIVWSSEKKKKRAKGSGGDDDDEDDVAEPEPVNNVDADSSDDEAPNED
DDNTDARIRKKRTEEQEYEDPESGEEEKSDDEVELNDEQPTEKGEDVLDSTTVDNDAETS
KIATDVVSNFREATNYSFDTKHYKWCELTVLFPISFLRVDLSQALREAAMKSVIHEVKHI
KRAITNKEKNVLYLKTEGINILQMFKYNNLLDLNKLYSNDIHAIANTYGIEAANKVIIKE
IQNVFNVYGITVDPRHLTLVADYMTYNGIFEPMSRKGMEASSSPLQQMSFESSLIFLREA
VLNSKKDNIRSASSCLMLGQPCRSGTGTFSLQHFSKVIS
NT seq
4980 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcaagtcgacatacgccgcgtcgacgtcgggcctgacgtccgtcgaccccgag
tatgtacaatttctaatgttttctgacgaagacgtgaggaagcttagtgtcagtaaaatc
actaatgtacaaagtttcgacgctatcggaaatcctacgaaaggaggtttgtatgactct
gctctcggacctttgagggacaggaatgaaacctgtggaacttgcaacaatgtgttgtta
cactgcccgggacactttgggcatattgagctaccacttgtagtggtcaaccctatgttt
atcaaaaacatctattctctcttccgcgtgagttgcttaaaatgcttcaaaattcaaatg
gatgataggctgaagtttatattgaaacttcagctggaactagttgatgcagggcatata
actgctgccttagacttggataactatgtaggggacatcaccagtggaaaagaaaattct
cctgaaaaaccaaataaagtcatcagaaaataccaaaagttactgaagaagagggatgca
gttgtagaaacatttcaaaacaagaatgtagataaattacgagcaaaatttattaatcaa
tattttagagtaatcaacacggctaagaagtgtgcttattgtgcttgcaagttaatcaaa
gtgactacttcagaaaataagattatgtacaatctaagtgctgatggtgctgaaaaaggc
tctaaaggcataaaaatcctgatgcctgatgaaatcaaacgctactgtacttctatcgct
caaaatgatgaagacatcctcaaatactgcttcccagttcttaaatactcaccaactcaa
ccagttactaatgctttcttcatggatgttgtacctgttctacctcctaatgtaagacct
tgcaatgttctgagaggagaactggttgaacaccctcagactaatgtgtataaggccata
ttacaaaatgcctttgctgcccgagcagtattacatgtactgtcttcttcagaccaacag
aaaacaattgacagtcttgatcagttaccaagacaagcttatgagagtgttcaaggcaaa
acagctgcagaaaaacttcacacggtctggcaagaattacaaaagagtatcaataacctt
ttaaactgtgaaggtcagggattagcgagtcagggtctaaaacagattattgaaaagaaa
actggtttgatcagaatgcatatgatgggaaaaagagttaattttgctgctcgatctgtt
atcacgcctgaccctaatgtagatatagatgaaatagggatacctgatgcttttgctatg
aaactgacataccctattcctgtcactgaatggaatgtagacgaactgaggaaaatggtc
ataaatggtcctaacaagcatcctggtgctgagaaaattgaaatggagaatgggagagta
atcagcatagctgcagattctatactaaagagaaagagtcttgccaaaaggttgctaaca
cctgatgagtttaaagcatctggtcttaaagttgttcatagacatttggtgaatggtgat
gtgttgattttgaaccgacagccatctcttcacaagcccagtatgatggcacatagggcg
agaatattaaaaggagagaagacacttagattgcactatgccaactgcaaatcttacaat
gctgattttgatggtgatgaaatgaatgcccatttcccacagaatgaaattgccaggagt
gaagcctacaacattatgtccgtgacaaagcagtatcttgtaccaaaagatggaacacca
ctgagtgggcttattcaagatcatgtaatttctggagtaagaatgtccctgcgtggcaca
tttttcacaaaatctgactaccaacaactagtttttcaagcacttcctaatcataaggga
ccaataaagctacttccacctacaatactcaagcctttagtgctttggtctggcaaacag
gttttgtcaaccatcatcattaatactacacccaaaggaaagccttgtcttacattgatt
gggaaagcaaaaattagttctaaagcttggcaaaagattgcacctagaccttggaaagct
ggtggtactccatttaataaccctaacacaatgacagaagccgaagtggttattaggaaa
ggggaactcctgtctggtgttttagataaaacgcattatggtgccacgccatatggtcta
gtgcactgcatgtatgagctatatggaggagatagttcaagtgccttactaagttccttc
tcaaaagtcttcacattttatttacaatggataggttttacacttggtgtcaaagatatt
ctagtagtagaagaagctgataaaaagcgcgatgactatatttgtttagtacgtaacgct
ggtaaagctgcagctgtgaaagctactgatctacctgctgatgtcgatgacgaaaaatta
aaagaaactatcgaaatactacacactaaagaccctaaattcagaacgaatctggacaga
cagtacaaaactatgctagattcttacacaaataatattaatactgcttgtttgtctgaa
ggattgctcgagaaattcccttacaataacttgcaactgatggtccagtctggtgctaaa
ggttcaactgtcaatactatgcagatctcatgcttacttggtcaaattgagttggaaggc
aaaagaccgccactcatgatatcgggaagatctttgccaagctttcctccacatgacgta
tcgccaagagctggtggattcatcgacggtagattcatgacaggaatccaaccacaagag
ttctttttccattgcatggccggtcgtgaaggtctcattgatactgccgtcaaaaccagt
cgatctggttacttgcaaagatgcttgattaagcatttggagagtttagctatttcctat
gatcatacagtgagggattcagataatagtgtcattcaattcgcttatggagaagatgga
ttagatgttctcaagtgtcaatttctcagagaagaccagtttccattccttgacataaat
tcaagcgcggtaattggagaagctgtgattgataaactgaaagaagatgaagatttaaaa
gacgttgcaaaagcaaataaatctctgaaaaaatggaagaagaagtatggtagtcctttc
gaaaaggttcgaacgagcggctttgtccaattctctgcagttgagaaaaaacagattgaa
ttagacgatttaccgactgacagaacgagggaccccttttactgggagctagagaagaaa
tggcgtgctatggatgaagaagaaagacaacagtacacaaggaagaaatgcccagaccca
atccccagcaagatgtcgcctgaatacaaattcggtgtcattaatgagcagttagatagt
atagtgcaaaattacttaaagaagcgtcattctagtgcatatgacgaacatacaccaaaa
gatagattcgtagacgtgatgaatgctaaatatcttgaatcaatggccgctccaggtgaa
cctgttggtttattagctgctcaatctataggagagccttctactcagatgacactgaac
actttccactttgccggtcgaggtgacatgaacgtgacactcggtataccgcgtcttaga
gaaattcttatgactgcttcagctaagcttaaaacccccaacatggacattccgttccga
gacgacataccggacttgactaagaaagctgaaaaattacgacaaaagctcaacagagtt
accgtagctgatgttttggagaagatagacgtgcaatgtcagatagttatccgacctgaa
aggcagttgaagacgacaatgcgctaccaatttttgccgcattctcagtataagacacaa
tatacggtgaagccaccgcagattataaagcatatgcagaacaaattcttccaagagatg
ttttcaacggtgacaaagcaagcaaaggcagttagtggtattgtttggtcttctgaaaag
aagaagaaaagggctaaaggtagcggtggtgatgatgatgacgaggatgacgttgctgag
ccggagccggttaacaatgtggatgcagacagttctgatgatgaagctcctaatgaagat
gatgacaataccgatgctcgtatccgcaagaagagaacagaagaacaagaatacgaagac
cccgaatcgggcgaagaagagaaatctgatgatgaagtggaattgaatgatgaacaacct
acagaaaagggtgaggatgtcttagactcaactaccgttgacaacgacgccgaaactagc
aaaatcgcaacagacgtagtctccaacttcagggaagctacgaattattccttcgacact
aaacactataaatggtgcgagctgaccgtactcttcccaatatcgttcctaagagtggac
ctatctcaggctctccgagaagcggcaatgaaatccgtcatacacgaagtgaaacacata
aaacgagcgatcacaaacaaggaaaagaatgtcctgtacctcaaaactgagggtataaac
attctacaaatgttcaagtacaacaatcttttagatttgaataaactatacagtaacgat
attcatgccattgctaatacatatggcattgaagctgctaacaaagtgattattaaagaa
atacaaaatgtgtttaatgtctacggtattacggtggatcctagacatttgacgttggtg
gctgattacatgacttacaacggtatatttgagcctatgagccgaaaaggaatggaagct
tcgtcgtcgccgttacaacaaatgtcttttgaatcatccttgatattcttaagggaggca
gttttgaattctaagaaggataacattagatcggcttccagttgtctcatgttaggccag
ccttgtagaagcggtactggcacatttagtttacaacacttcagtaaggttatcagctaa
DBGET
integrated database retrieval system
