Helicoverpa zea (corn earworm): 124638784
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Entry
124638784 CDS
T08400
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
hze
Helicoverpa zea (corn earworm)
Pathway
hze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124638784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hze03041
]
124638784
Spliceosome [BR:
hze03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
124638784
Complex C
U5 SnRNP specific factors
124638784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
HAT_PRP39_N
TPR_19
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_16
TPR_17
FAT
TPR_CcmH_CycH
TPR_12
ARM_TT21
TPR_21
NatA_aux_su
Motif
Other DBs
NCBI-GeneID:
124638784
NCBI-ProteinID:
XP_047031835
LinkDB
All DBs
Position
18:8290121..8301722
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AA seq
929 aa
AA seq
DB search
MSVPPQAFVNKNKKHFLGIPAPLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAPPA
AKRKKTEEEDDDEDLNDSNYDEFSGYSGSLFSKDPYDKDDAEADAIYESIDKRMDEKRKE
YREKRLKEDLERYRQERPKIQQQFSDLKRELKSVSEDEWSAIPEVGDARNRKQRNPRAEK
FTPLPDSVLSRNLGGESSSSIDPGSGLASMMPGVMTPGMLTPSGDLDLRKIGQARNTLMT
VKLSQVSDSVTGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAW
IASARLEEVTGKVQSARNLIMKGCEVNPSSEELWLEAARLQPRDTARAVIAHAARNLPHS
VRIWVKAADLEQETKAKRRVYRKALEHIPNSVRLWKAAVELENPEDARILLSRAVECCPT
SVELWLALARLETYENARKVLNKARENIPTDRQIWVTAAKLEEAHGNTHMVEKIIDRAIT
SLSANGVEINREHWFKEAMEAEKSGAVHTCQAIIRAVIGHGIEPEDQKHTWMEDAEACAN
EGAYECARAVYGYALSVFPSKKSIWLRAAYLEKQHGTRASLEALLQRAVAHCPKSEVLWL
MGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENKEYDRARRLLSKARASA
PTPRVMIKSAKLEWALNNLDVALKLLEEAIKVFADYAKLHMMKGQIEEQMEKDEEARNTY
SQGLKKCATSVPMWILLARLEEKLKNVTKARSVLEKARLRNPKTAELWLESVRLERRNGS
AEIANAVMAKALQECPNAGRLWAEAIFMESRPQRKTKSVDALKKCEHDAFVLLAVSQLFW
TERKLNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKTRCKTAEPHHGEAW
CKVSKDIANWCFSTEQILLLVAKNLPVPT
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgccaccgcaggcatttgtaaacaaaaacaaaaaacacttcctggggatccca
gcgcccttaggttatgtcgctggtgtaggtcgaggtgccactggtttcaccacacgatct
gatatcggtcctgcgagagacgccaatgatgtgtctgatgatcgtcatgcgccacccgcg
gctaaacgcaagaaaactgaggaagaagatgatgatgaggatttgaacgactccaattat
gatgaattctcaggctacagcggttcattgttttctaaggacccttatgataaagatgat
gcagaagcagatgccatttatgaatcaattgacaagaggatggatgagaagagaaaagaa
tatagggagaaacgtctcaaagaagacttggaaagataccgtcaagaaaggccaaaaatt
cagcagcaattctcagacttaaaacgtgaattgaaatcagtatccgaggatgaatggtca
gccatacccgaagtcggtgatgcacgtaacaggaagcagcgtaaccctcgagctgagaag
ttcactccattgcctgacagtgtgctctccaggaacttgggtggagaatcttcatcttcc
attgaccctggatctggactggcttctatgatgcctggcgttatgactccaggaatgctg
acaccatctggtgatttggatttaagaaagatcggtcaagccagaaacactctaatgaca
gtgaaactatcccaagtctcagactctgtaacaggccagactgtagtagaccctaagggt
tacctgactgacttgcagtccatgatacccacgtatggtggtgatatcaatgatattaag
aaggcgagattattgctcaagtctgttagagagacgaatcctaaccatccaccagcttgg
attgctagtgctaggttggaagaagtgacaggcaaagtccaatcagcccgtaacctaata
atgaaaggctgtgaagtaaacccgagcagtgaggagctctggttagaagcggctcggcta
caaccgagagataccgcccgtgccgtcatagctcatgctgctaggaacctgccgcatagt
gtcaggatatgggtgaaggctgctgatttggagcaggagactaaggcaaaacgccgagtc
taccgcaaagctctagaacacatacccaactctgtccgtctatggaaagcagcagttgaa
cttgaaaatccagaagatgcgagaatcttactgtcaagagccgtagaatgttgtcccact
agtgtagaactgtggctcgcgttagcaagattggaaacttatgagaatgcccgaaaagta
ctgaataaggcccgcgagaatatacctactgatcgacagatttgggtgacggctgctaaa
cttgaagaagcacatggcaacactcacatggtagaaaagatcatagaccgtgcgatcaca
tctttaagtgctaacggcgtagaaatcaatcgcgagcactggttcaaagaagctatggag
gccgagaaatctggcgctgttcatacttgtcaagctatcatccgagcagtaattggacat
ggaatagaacctgaggatcaaaaacatacttggatggaagatgctgaagcttgcgcaaac
gaaggtgcctacgaatgcgcccgcgcagtgtacggctacgcgctgtcagtgttcccgtcc
aagaagtccatatggctgcgagccgcctacctggagaagcagcacggcactcgcgccagc
ctggaggccttgctgcagagagccgtggctcattgtcctaaatcggaggtcttgtggctc
atgggggctaagtctaagtggttggctggtgacgtaccggcagcgcgaggtatcctctcg
ctagctttccaagcgaacccgaactctgaggagatttggctggcggccgtcaaactggag
agcgagaacaaggagtacgacagagcgaggcgactgctttccaaggctagggcttcggca
cctacacctagggtgatgataaaatccgccaagctagaatgggctctaaacaacctggac
gtagcgttgaaattgctagaggaagcgatcaaggtgttcgccgactacgccaagttgcac
atgatgaagggacagattgaagaacaaatggaaaaggatgaggaagcacgcaatacttat
tcacaagggctgaagaaatgtgcaacaagtgtaccaatgtggatattattagcgagactg
gaagagaagctcaagaatgttaccaaagcgagatcagtgctggaaaaggccaggctaagg
aatcctaagactgcggagttgtggttagaaagcgttcgtctagaaaggcgaaacggcagc
gcagagatagcgaacgctgtgatggctaaagcgttacaggagtgccccaacgccggccgc
ttgtgggcagaggcaatattcatggagtcaagaccgcagaggaagactaagagcgttgac
gcgctaaagaaatgcgagcatgacgcgttcgtactgttggcggtgtcgcaactcttctgg
actgagaggaaactgaacaagtgcagagagtggttcaaccgaacggtaaaaatcgacccc
gacctaggagacgcatgggcttacttctacaaattcgaacttctccatggcaacgagcaa
caacaagaagacgtaaagactcgatgtaagaccgccgagcctcaccacggtgaagcttgg
tgcaaggtttccaaagacatcgccaattggtgctttagtaccgaacagattcttttactc
gtggctaagaacttgcctgtacctacgtga
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