Helicoverpa zea (corn earworm): 124639228
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Entry
124639228 CDS
T08400
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
hze
Helicoverpa zea (corn earworm)
Pathway
hze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124639228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hze03019
]
124639228
03012 Translation factors [BR:
hze03012
]
124639228
Enzymes [BR:
hze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124639228
Messenger RNA biogenesis [BR:
hze03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124639228
Translation factors [BR:
hze03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124639228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
HA2_N
DEAD
OB_NTP_bind
nSTAND3
HA2_C
AAA_19
ResIII
AAA_11
RsgA_GTPase
AAA_22
ABC_tran
PhoH
NB-ARC
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
124639228
NCBI-ProteinID:
XP_047032455
LinkDB
All DBs
Position
18:complement(7180571..7191666)
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AA seq
1204 aa
AA seq
DB search
MDESNGIGLNPLSFGIHPLSAGINPNEFPVNIKMEPHENFYVKQEPYQHFQIKQEPPNEF
HQWTPNAWNNQIKMECNMGNLVPIKQEIPHKFQIKQELGNPVSLKLEVAENKPIRRTQSV
TSTYTEASRISVVQSIRMSRRGNWNRAFYKNNNYRGRPQGLRGKNIGLYYRDLQMKKNKN
KDQDFMINFAIPPGILNSLQKNIESIKKIAKECNINIQPPRRMNLVNIKQEQPSEYECST
QVDNFPVNNFMKLPRETSSFERPGTSSSSNVVEPMNQESETVRAIIKAEPTNEPEVAQSS
HSSDIRMSALQGAGDYKYGYADIITGTFEEKLEQCISKGIIITMENSATQTLNTTFYENY
KNMINSKTYKKMKVFREILPTYKKSKELLEVINNNQVVVISGETGCGKSTQIPQIILDDA
IVNNRGANVHILVTQPRRIAASSLAMRVAEERSERIGESIGYAVRLETIEPRPRGSIKFC
TTGILLAELEVNQGLTNYSHVILDEVHERDCHIDISMLMLKQVLKKRKDLKLILMSATID
AEKLQSYFDDCPMMHIEGLAYPVQDIYLEDILSLIKYIPPVDQGNNQNVKIWQRQKMKRQ
EAEMQRDIQYKAEIAPWLESIRKNISRDVYVALQDSKIEDLNIDLIYELLVYICKDAPGA
VLIFLPGIGDITKLLKKINTSNFFPKSLYDIYPLHSKLPSLEQHKIFQRPPENVRKIILA
TNIAETSITIDDIVYVIDCGKIKYSGLNIEDNIPTLQTEWVSQANLRQRRGRAGRCQPGV
CYHLVTSFRASKLAERLLPEIQRNSLAEPVLAIKRLRLGKAVDAMSMMPSPPAVTTTERA
VRHLFQIGALNSEEKLTPLGWHLARLPVHPAAGKLLLLGTIFGCLNRAASVAAVWGFKDP
FQLVIGKEKEVDEAKRTLALGEPSDHVAISEAIIQFEQCRSYQEKRNFAYENFLAFNTLE
LLCDMKKQFGDNLKQMGFLQRADVTSDWENRNMNNMSLFKAIIAASLYPNIATVGWRQSH
GRNPQSQPRLKVRTSEDGPIAIHPSSVMAYKMHGGQRFPMQPACITPGANWLVYWLKQRS
SDLFLIDVTLIYTLPFLFFGELVVSEAPDPSDYCVMISNVKVNCKKSTMDLLWQMRSLLD
QVLASKIGDSSKQATLRNPFENQVFDAVMELITAEDERAEYIADDDDSESDTSEFYSNRY
SWRR
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggatgaatcgaatggaattggactaaatcccttatcgtttggaatccatcccttatca
gctggaataaatccaaacgagtttccagtgaacataaaaatggaacctcatgaaaacttt
tatgtaaaacaggaaccctatcaacattttcaaataaaacaggaacctcctaatgaattt
catcaatggacgccaaacgcctggaataatcaaataaaaatggaatgtaatatgggtaat
ttggttccgataaaacaagaaattccccataagtttcaaataaaacaggaactaggaaat
ccagtgtctttaaaattggaagttgccgaaaataaaccaattcgacgtacgcaatcggtt
acctcaacctacacagaagcttctagaatatcagtagtgcagtcaatcaggatgtctcgt
cgtgggaattggaatagagcgttttacaaaaataacaattacaggggcagaccacaaggt
ttgcgcggtaaaaatattggcctttattacagagacctgcaaatgaaaaaaaataaaaac
aaggatcaagacttcatgatcaattttgctattcctcctggaatattaaatagcttacag
aaaaacatagaatccattaaaaaaattgctaaagagtgcaatatcaacatacagccacca
aggcgcatgaacttggttaatataaaacaagaacagccatctgaatatgaatgttcaact
caagttgataatttccctgtgaataactttatgaagttacctcgagaaacaagttctttt
gagagaccaggcacttcatccagcagtaatgttgtggaaccaatgaaccaagagtcggag
actgtcagagctattattaaagctgaaccaacaaatgaacctgaggtagcacaatctagt
cattccagtgatatacgaatgagtgccctgcaaggagcaggagattacaagtatggttac
gcagacattatcactggaacatttgaagaaaaacttgaacaatgtatctcaaagggtatt
ataataaccatggaaaattctgcaacccaaactttgaacacaaccttctatgaaaactac
aaaaatatgataaactcaaaaacttacaaaaagatgaaggtgttcagagaaatattacca
acttacaaaaagtcgaaggaattattagaggtaataaataacaatcaagtggttgtaatt
agcggtgagactggatgtggaaagtctacacagattccacagattattttagatgatgca
attgtcaacaacagaggtgctaatgtccatatactagtcacacagccgcgacgtattgca
gcctcatctttggctatgagagttgctgaagaaagatctgaacggattggtgaatccata
ggatatgctgtgagattggagactatagagccaaggccgcgtggtagcattaagttttgt
actacgggtattttactagctgagctagaagtcaatcagggtttaactaactatagtcat
gtgatacttgatgaggtgcatgaaagagactgccatattgacatatctatgttgatgttg
aaacaggtgctcaaaaaacgcaaagatctcaaacttattcttatgagtgctacaatagac
gcggaaaagctgcagtcgtatttcgacgactgtccaatgatgcacattgaaggattagct
taccctgtacaagatatttatctagaagatattctaagcttaattaagtatatcccacct
gtagaccagggtaataaccaaaatgttaagatatggcaaaggcagaaaatgaagagacaa
gaagctgaaatgcaaagggatatacaatataaagctgaaattgctccatggctcgaatct
ataagaaagaatataagtcgagatgtttatgtagcacttcaagacagtaaaattgaggat
ttgaacatcgatctcatttacgaactcttagtctatatttgcaaagacgcgcccggcgct
gtgctaatattcctgccaggaatcggcgacataactaaattgttgaagaaaattaataca
agtaatttcttcccaaaatccctttatgatatctatcctcttcattcaaagttgccatct
ttggaacagcacaaaatattccagcgtccgccagaaaatgtaaggaagataatcctagca
acaaatatagcagaaacatctataactatagatgatattgtgtacgtcattgactgtgga
aaaataaagtacagtggactcaacatagaagataatatacctactttacaaactgagtgg
gtttctcaagcgaatttgcgacaacgccgtggtcgcgccggccgctgccagcccggggta
tgttaccacctagtcacatcattccgcgccagcaagctagcagagcgcctcctaccggag
atacaaaggaactcactagctgagcccgtgctcgctataaaacgactgcgcttgggcaaa
gctgtggatgctatgagtatgatgccctcgccgcccgctgttactactacggaaagggct
gttaggcatttgtttcagattggagcccttaacagtgaagagaagctaacccctcttggc
tggcacttagcgcgactgcccgtgcaccccgccgccggcaaactgttgctgttaggaact
atattcgggtgtctcaaccgcgcggctagtgtagctgccgtttggggctttaaggacccc
ttccaacttgttattggcaaagaaaaagaagtagatgaagccaaacgcactctcgctctc
ggcgagccaagtgaccacgtggctatatcggaagccatcatacaattcgagcaatgtcgc
tcttaccaggaaaaacgcaactttgcctacgaaaacttcctagcattcaatactttagaa
cttctatgtgacatgaagaaacagtttggcgataatctgaagcagatgggatttttgcaa
agggctgatgtcacatccgattgggagaataggaatatgaataacatgagcctgttcaaa
gctatcattgctgcttctttgtatcctaatattgctactgtaggatggcgacaatctcac
ggccgcaatccgcaatcccagcccagacttaaagttcgtacatctgaagatgggcccata
gccatacacccaagtagtgtgatggcgtacaaaatgcacgggggtcaaaggttcccgatg
cagccagcgtgcatcacgccaggagccaattggctggtctactggctcaagcagaggtca
tctgacctcttccttattgatgtcaccctgatatacacgttaccgtttctgtttttcggt
gaattggtggtttctgaagcgccggacccatcagactactgcgttatgatatctaatgtc
aaagttaattgcaagaaatccactatggatcttctgtggcaaatgcggtctctattagac
caagttttagcttccaaaattggtgactcaagcaaacaagccacgcttagaaaccccttt
gaaaatcaagtatttgatgctgtcatggagttaataacggctgaagatgaacgcgccgag
tatatcgccgacgatgatgattcagaatccgatacttccgaattttactccaacagatat
tcttggcgacgttga
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