Helicoverpa zea (corn earworm): 124639343
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Entry
124639343 CDS
T08400
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
hze
Helicoverpa zea (corn earworm)
Pathway
hze03013
Nucleocytoplasmic transport
hze03015
mRNA surveillance pathway
hze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124639343
09122 Translation
03013 Nucleocytoplasmic transport
124639343
03015 mRNA surveillance pathway
124639343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hze03019
]
124639343
03041 Spliceosome [BR:
hze03041
]
124639343
Enzymes [BR:
hze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124639343
Messenger RNA biogenesis [BR:
hze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124639343
Spliceosome [BR:
hze03041
]
Complex C
Other components
EJC/TREX
124639343
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124639343
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
124639343
NCBI-ProteinID:
XP_047032610
LinkDB
All DBs
Position
19:1251566..1253518
Genome browser
AA seq
425 aa
AA seq
DB search
MADNDDLLDYEDEEQADQQTADGATEAAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVD
CGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSENHVYVLVMCHT
RELAFQISKEYERFSKYMAGVRVSVFFGGMPVQKDEEVLKTACPHIVVGTPGRILALVNS
KKLNLKHLKHFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKF
MQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCIA
LAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKEFQKRILVATNLFGRGMDIERVNIVFNY
DMPEDSDTYLHRVARAGRFGTKGLAITMVSDENDAKILNEVQDRFDVNITELPEEIELST
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaacgacgatcttctggactacgaagacgaggagcaggcagatcagcagacc
gctgacggggcgaccgaagcggcgccaaagaaagaggttaagggatcctatgtctctatc
cacagctccggttttagagatttcttgttaaagcccgagatattgcgcgccatcgtcgat
tgcggtttcgagcatccatcggaagtacaacatgaatgtattccgcaagctgtccttgga
atggatatcttgtgtcaagcgaagtcgggtatgggaaaaaccgccgtttttgtgctggcg
acgctgcagcagctagagccatcggaaaaccatgtctacgtcctcgttatgtgccacacg
agagagttagctttccagatcagcaaggaatacgaacgattctccaaatacatggccggc
gtcagggtttcggtgttcttcggtggaatgccggtacagaaagacgaagaggtcctcaaa
acggcgtgccctcacatcgtcgtcggtacgcctggcaggattttggccttagtaaacagt
aagaaactgaatctgaaacatttgaagcactttatacttgacgaatgtgacaagatgctc
gaatctctggacatgagacgcgacgtgcaggagatattcagaaacacgccgcacggcaag
caagtcatgatgttctccgctacactgagcaaagagatcagaccagtgtgcaaaaagttc
atgcaggatcctatggaggtgtacgtggacgatgaagccaagctgaccctgcacggtttg
cagcagcattatgttaagcttaaggaaaatgagaagaacaagaagctgtttgaactactt
gatgttctggagttcaaccaagtagtcatatttgtcaagtcagtgcagcgctgcatagcc
ttagcacagttgttaacagaccagaacttccccgctattggaatccacaggaacatgact
caggatgagcgtctctctcgctaccagcagttcaaggagttccagaagagaatcctggtt
gccaccaacttgtttggtagaggaatggatattgagcgagtgaacatcgtgttcaactat
gacatgcctgaagactcagatacgtacctgcatcgtgtggctcgtgctggaagatttggt
actaaaggcttagcgataaccatggtgtcagacgagaatgatgccaagatcctcaatgaa
gtgcaagaccgcttcgacgtcaacattacggagttgcctgaagagattgagctatcaact
tatatagaaggacgataa
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