Helicoverpa zea (corn earworm): 124643710
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Entry
124643710 CDS
T08400
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
hze
Helicoverpa zea (corn earworm)
Pathway
hze03020
RNA polymerase
hze03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hze00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124643710
09124 Replication and repair
03420 Nucleotide excision repair
124643710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hze03021
]
124643710
03400 DNA repair and recombination proteins [BR:
hze03400
]
124643710
Enzymes [BR:
hze01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124643710
Transcription machinery [BR:
hze03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
124643710
DNA repair and recombination proteins [BR:
hze03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
124643710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
124643710
NCBI-ProteinID:
XP_047038747
LinkDB
All DBs
Position
1:8027451..8035121
Genome browser
AA seq
1901 aa
AA seq
DB search
MATTNDSKALVRQVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGV
IDRASRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPTNP
KIKEVVMKSKGQPRKRLTYVYDLCKGKNICEGGEDMDIGKEGEEGKRGSGHGGCGHYQPS
IRRQGLDLTAEWKHANEDTQEKKIIITAERVWEILKHITDEESFILGMDPKFARPDWMIV
TVLPVPPLSVRPAVVMFGSAKNQDDLTHKLADIIKANNELMRNEQSGAAAHVLAENIRLL
QFHVATFVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD
PNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNAQYPGAKYIVRDNGERIDLR
FHPKPSDLHLQHGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS
PYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTK
RDVFLTKEQVMNLLMFLPTWDGKIPQPCILKPQPLWTGKQIFTLIIPGPVNMIRTHSTHP
DEEDDGPYKWISPGDTKVVVEHGELLMGILCKKSLGASAGSLLHICMLELGHETAGRFYG
NIQTVINNWLLLEGHSIGIGDTIADPQTYQEIQRAIVKAKEDVIEVIQKAHNMELEPTPG
NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ
QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDT
AVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTVK
LSNKAFEKKFKFDPSNERYLKRIFSEDIIKELTESGYVISDLESEWEQLCKDREVLRQIF
PSGESKVVLPCNFKRMIWNAQKTFHINKRMPTDLSPIKVISGVKDLLKKCVIVAGEDRLS
KQANENATLLFQCLVRSTLCTKFVSEEYRLSTVAFEWLIGEIETRFQQAQVNPGEMVGAL
AAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARD
AEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPW
LLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNEESKFQ
DNDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTEAKKRIIITEQGEFK
AIAEWLLETDGTSLMKVLSERDVDPIRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVD
PMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKLGMEMGGLGVGGVGGGMYFGVGTPSMTP
LMTPWSTQNTPGYGSSAWSPGQVGSSMTPGGPSFSPSGASDASGLSPAYSAWSPQPGSPG
SPGPPLSPYTSPAGASPSYSPTSPVYAPASPSLTPTSPHYSPTSPSYSPTSPNYSPTSPI
YSPTSPSYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPAYSPTSPGYSPSSPSYSPTSPVYSPASPSYSPSSPNYTPTSPAY
SPASPSYSPTSPAYSPTSPSYSPSSPKYSPSPNYSPTSPSVAGRSPTYSPTSPQYSPTSP
QYSPTSPAYSPSSPQHPGSTRYSPSSPNYSPSSPNYSPSSPGYSPSSTKYSPTSPTYTPT
SPNYSPSSPAYSPTGSGGPTTYSPTSPTYSPTSPNYDDSDD
NT seq
5706 nt
NT seq
+upstream
nt +downstream
nt
atggctaccacgaatgactcgaaggcgcttgtgcgccaagtaaaaagagtacaatttggt
atattatctccagatgaaatccgacggatgtcagtcacagaagggggaattcgtttcccc
gaaactatggagggtggcagacccaagcttggcggacttatggatccgagacaaggggtg
attgacagagcttccagatgtcaaacttgtgctggaaacatgactgagtgtcctggacac
tttggacacattgacttagcaaaaccagtattccacattggttttataacaaaaacaata
aagatacttagatgtgtctgtttctactgttcaaagctgctcgtcagcccaactaaccca
aagataaaagaagttgtgatgaaatcaaaaggacagcctcgtaagagattgacctatgta
tatgacttatgtaaaggcaagaatatttgtgagggtggtgaggatatggatataggtaaa
gaaggagaagaaggcaaaagaggctcagggcacggtggttgtggtcactaccagccatcc
atcagaagacaaggtcttgatctgacagctgagtggaaacacgctaatgaagacactcag
gaaaagaaaataataatcactgcagaaagagtttgggaaatcctcaaacatatcacagat
gaagagtcctttatactgggtatggaccctaaattcgcaagacctgactggatgatagtg
acagttctgccagtaccaccactgtcagtgagaccagctgtagtgatgtttggctcagcc
aagaaccaggatgacttgacacacaaacttgctgacataatcaaagcaaacaatgagctg
atgaggaatgaacagtctggtgcagcagctcacgtgcttgccgaaaacataagactgcta
cagtttcatgtagccacatttgtagataatgatatgcctggaatgcctaaagctatgcag
aaatcaggaaaacctctcaaagctataaaggcacgtctaaaaggaaaagaagggagaatt
cgaggaaatctcatgggaaaacgagtcgatttctctgcgcgtactgtcatcacgcctgat
ccgaacttgcgtattgaccaagtaggagtacctagatccattgcacaaaacttgacattc
cctgaacttgtaacacctttcaatattgacagaatgcaggaacttgtacgcaggggcaat
gcacagtatcctggcgctaaatatattgttcgcgataatggagaaagaatagacttaaga
tttcacccaaagccatccgatctgcatttacaacatggttacaaagttgaacgtcacttg
agggatgacgatcttgttattttcaaccgacaaccgacacttcacaagatgagtatgatg
ggtcacagagtaaaagtattgccatggtcgacattccgtatgaatttaagttgcacctct
ccctataacgccgatttcgacggtgacgaaatgaatctgcatgtaccacaatcaatggaa
acaagggcagaggttgaaaatatccacataacgccaaggcaaattattactccccaagca
aataaacccgtcatgggtattgtgcaggacacattgacagctgtaaggaaaatgactaag
cgtgacgtgttcctcacgaaagaacaagtaatgaatcttctaatgttcttacctacatgg
gatggtaaaatccctcagccttgcattttgaaaccacagccactgtggactggtaaacaa
attttcactctgattattccgggtccagtaaacatgattcgaactcattccacacatcct
gatgaagaagatgatggtccatataagtggatctctcctggagatactaaggttgttgta
gaacatggtgaattgctcatgggcatcttgtgtaaaaagtcacttggtgcttcagcaggt
tccttgctacatatttgcatgttggaactgggtcatgagacagcaggtcgcttctacggt
aacattcaaactgtaatcaacaactggctactgctagaaggtcactctatcggtatcggc
gacaccattgccgatcctcagacttatcaagaaattcagcgcgccatcgtgaaagccaaa
gaggatgtcatagaagtcattcaaaaagctcacaacatggagctggaacctactcccggt
aacactctcagacagacattcgaaaatcaagtgaatcgtattctaaacgacgctcgtgac
aaaactggtggatcagctaagaaatctctcactgagtacaataacctaaaggctatggtg
gtagctggttctaagggttccaacattaatatttcccaggttattgcttgtgtagggcaa
cagaacgttgaaggtaaacgtattccgtttggattccgtaaaagaacattgccgcatttc
atcaaagacgattacggtcccgagtctagaggtttcgtagaaaactcgtatcttgccggt
cttactccatctgaattctatttccacgctatgggaggtcgtgaaggtcttattgatact
gccgtaaagaccgctgagactggatacatccagcgtcgtctgataaaggctatggagtct
gtaatggttcactacgatggtactgtccgtaattctgtgggacaactcattcagttgagg
tatggtgaagatgggctggctggagaaacagtagagttccagaatttgcctactgtcaag
ttatctaacaaggcatttgaaaagaaattcaagttcgatccctcaaatgaaaggtatttg
aagaggatcttcagtgaggacataataaaggagttgacagaatctggttatgtcataagt
gatcttgagagtgaatgggaacaactttgcaaggacagagaagtattgcggcaaattttc
ccaagtggtgaatctaaagttgtattgccttgcaatttcaagagaatgatttggaatgca
caaaagactttccatataaacaaaagaatgcctacagatctgagccccattaaggttatt
tcaggtgttaaagatctactgaaaaagtgcgttattgtagcgggtgaggatcggctgtca
aagcaagctaatgaaaacgctactttactattccaatgtttggtgcgctctacgctttgc
accaagtttgtatctgaagaatacagactgtcaacagttgcttttgagtggttgattgga
gaaatcgaaacccgattccagcaagcgcaggtgaaccccggcgagatggtgggcgccctg
gccgcgcagtctctgggtgaacccgccacgcagatgacactgaacactttccatttcgcc
ggtgtgtcgtccaaaaacgtaacactcggtgtgccacgtcttaaggaaattatcaacatc
tctaagaaacctaaagctccatctctaacggtgttcttgactggaggagcggctagagat
gctgagaaggctaagaacgtgttatgtagactggaacacactacattgcgtaaggtgact
gcgaacacggctatttactacgaccctgacccgcaaaacactgttatagctgaagatcaa
gaatttgttaatgtttactatgaaatgcctgactttgacccaacaaagatttctccgtgg
ctgctgcgtattgaattagatcgcaagaggatgacggacaaaaaactgactatggaacag
attgctgaaaagataaatgctggttttggagacgatttgaattgtatcttcaacgacgac
aacgctgagaagcttgttcttcgtattaggattatgaataatgaagaaagtaaattccaa
gacaatgacgaagaaacagttgacaaaatggaagatgacatgttcttgagatgtattgaa
gctaacatgttatctgacatgacactacagggtattgaggctatagccaaggtgtacatg
catttgccacagactgaagctaagaaacgtatcataatcacagaacaaggagaatttaag
gctattgctgaatggttattggaaactgatggtacttcgctaatgaaagtactctctgaa
agagatgtcgatcctatcaggacattcagtaacgacatttgtgaaatattccaagtactg
ggtatcgaggctgtgcgtaagtcagtcgagaaggaaatgaatgctgtgttgcagttctac
ggtctatacgtgaactatcgtcatcttgctttgctttgtgacgtcatgacggccaaaggt
catctcatggctattactcgtcacggtatcaacagacaagacactggtgcgctgatgaga
tgctcattcgaagaaactgtcgacgtgttgctggatgccgccagtcacgctgaagtagat
ccaatgagaggcgtgtccgaaaatattattatgggccaactgcctagaatgggaactggt
tgtttcgatttgctacttgacgcggaaaaatgtaaactgggtatggagatgggtggtctc
ggtgtgggaggagtcggcggcggcatgtacttcggagtcggcactccatccatgacaccc
ttgatgactccatggtcgacacagaacactcctggatatggaagcagtgcatggtctcca
ggccaagtgggaagcagcatgacgccaggcggcccatcattctcgccatcgggcgcgtcg
gacgcgtcgggtctgtctccggcgtacagcgcgtggtcgccgcagccgggctcgccgggg
tcgccggggccgccgctgtcgccctacacgtcgccggccggcgcctcgccctcgtactcg
cccaccagccccgtgtacgcgcccgcgtcgcccagcctcacgcccacgtcgccgcactat
tcgcccaccagcccgtcgtattcgccgacgtcaccgaactattcgccgacctcgccgata
tattctcctacatcgccgagctactcccctacatcgcctggctattcgcccacgtcgccc
tcttattctcctacgtcaccgagctactcgcctacttctccaagttattctccgacgagc
cctgcgtattcaccgacatcgccgagctattcgccgacgtctcctagctactcgccaacg
agtccgtcgtactctccgactagtccgtcgtactcccctaccagtcccgcgtactcgccg
acgtcgccgggctattcgccatcttcgccgagctactctccgactagtcctgtttacagt
cccgcatctccaagttactcaccgtcttcaccaaattatacgccaacatctccggcttat
tctcctgcaagtccttcatactcaccgacctcaccagcgtattccccgacttcacccagt
tattcgccatcttcgcctaaatattcaccatctcccaactattctccgacgtcaccgtca
gtcgctggcaggagtcctacatactctcccacaagtccccaatattctcctacaagtccg
cagtactccccgacgagcccggcatattctccctcgtctccacaacacccaggaagcaca
cgttactcgccatcatcaccaaattattcaccgtcttctccaaattattctccatcctcg
ccaggatactcaccgtcttcgacaaagtattcaccgacgtctccgacgtacaccccaact
tcccccaactattcaccatcatcccccgcatactccccgaccggttcgggaggaccgact
acatattctccaacgtctcctacatattctcctacttcacctaattatgacgacagcgac
gattag
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