Helicoverpa zea (corn earworm): 124644224
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Entry
124644224 CDS
T08400
Name
(RefSeq) cleavage stimulation factor subunit 1
KO
K14406
cleavage stimulation factor subunit 1
Organism
hze
Helicoverpa zea (corn earworm)
Pathway
hze03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hze00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124644224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hze03019
]
124644224
Messenger RNA biogenesis [BR:
hze03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
124644224
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_WDHD1_1st
CSTF1_dimer
Beta-prop_EML_2
WDR55
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Ge1_WD40
NBCH_WD40
Beta-prop_VPS8
WDR90_beta-prop_4th
eIF2A
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_NWD2_C
Beta-prop_WDR75_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
Beta-prop_Vps41
Beta-prop_Nup120_160
RMC1_N
Beta-prop_HPS5
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
124644224
NCBI-ProteinID:
XP_047039431
LinkDB
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Position
29:complement(5489438..5497552)
Genome browser
AA seq
433 aa
AA seq
DB search
MKETTGDVDTRNVVKNRELLYRMIISQLYYDGFQPIAATLAAAVHADPPCPPSDRLLNLM
MVGLQHEPDRKDRLAASSGAEHLLGTTGFDLEYEMDASSLAPEPATYETAYVTSHKMACR
AGAFSACGQLVATGSVDASIKILDVERMLAKSAPEEVDPGREQQGHPVIRTLYDHTDEIT
ALDFHPREQILVSASRDCCIKLFDITKASAKKAYKSITDAEQVLCVAFHPLGDHIIASST
QPVIRLYDVTTSACFVCPIPSHHHTKQVNSIQFSPNGKYFASGSADGCVKLWDTVSNRCF
NTFINAHDGSEVCSVAFTRNSKYLLTSGLDSSIKLWELASSRCLIQYTGAGTTGKQEHHA
QAVFNHTEDYVMFPDEATTSLCTWHSRSASRCQLMSLGHNGAVRFIVHSGTAPAFLTCSD
DYRARFWYRRNTH
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaaactactggcgatgtcgacaccaggaatgtcgttaaaaaccgagagctgctt
taccgcatgattataagtcaactgtactatgatggcttccaacccattgctgcaacgttg
gcggcggctgttcacgctgacccgccttgtccgcccagcgacaggctgcttaacttgatg
atggtgggtctgcaacatgagcctgatcgcaaagaccgtctggctgcctctagtggagct
gaacatttgctcggaactactgggtttgatctagaatacgaaatggacgcatcatcgctg
gcgccggagccggcgacgtacgagacggcgtacgtgacgtcacacaagatggcgtgtcgc
gccggcgccttcagcgcgtgcgggcagctagtcgccaccggctccgtcgatgcctctatt
aagattctagacgtggagcgtatgttggctaagtcagcacccgaggaagtggaccctggc
agagagcagcaaggacatcctgttattaggactttatacgaccacacagacgagataaca
gctttagacttccacccgcgggaacagatcctggtgtctgcttcaagagactgctgcatc
aaactcttcgatatcaccaaggcctccgccaagaaggcttataagagtatcaccgacgcc
gaacaagtcttatgcgtagccttccacccgctaggcgaccacataatagcgtccagcact
cagccagtcatccgtctgtacgatgtgacgaccagcgcgtgcttcgtgtgccccataccc
tcgcaccatcataccaaacaagtcaattctatacagttctcaccaaacggcaagtacttc
gctagcggtagcgcggacgggtgcgtgaaactgtgggacacagtgtcgaacaggtgtttc
aacacctttatcaacgcacacgacgggtccgaagtttgttccgtcgccttcactaggaat
agcaagtatctattaacatcgggactggattcatctatcaagctatgggaattggcgagc
agtcggtgtctgatacaatatacgggcgctggtaccacaggcaaacaagagcatcacgcc
caagccgttttcaatcacactgaggactatgtaatgttccctgatgaagctaccacgtct
ctctgcacctggcattctaggagtgccagtaggtgccaacttatgtcgctaggacataat
ggagctgtcagattcatagtacactcaggcaccgcaccggcgttcctaacgtgcagtgac
gactaccgcgcgcgtttctggtacagacgcaacacgcattaa
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