Helicoverpa zea (corn earworm): 124645853
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Entry
124645853 CDS
T08400
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
hze
Helicoverpa zea (corn earworm)
Pathway
hze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124645853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hze03019
]
124645853
03041 Spliceosome [BR:
hze03041
]
124645853
Messenger RNA biogenesis [BR:
hze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124645853
Spliceosome [BR:
hze03041
]
Complex B
Other components
Prp19-related factors
124645853
Complex C
124645853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_12
TPR_15
Mad3_BUB1_I
NRDE-2
PPR
DHR-2_Lobe_A
ARM_TT21_C
TPR_10
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
124645853
NCBI-ProteinID:
XP_047041750
LinkDB
All DBs
Position
3:complement(10517498..10520745)
Genome browser
AA seq
841 aa
AA seq
DB search
MPILDGKEIDIFFSEEDLPYEEEILRNPFSVKHWLRYIEHKKAAPKHEINMIYERALKEL
PGSFKLWYNYLKLRRSQIRGKCITDPCFEDVNNCFERSLVFMHKMPRIWMDYCTFLTDQC
KITGTRKAFDSALRALPITQHHRIWPLYLSFLKKHNISETAVRVFRRYLKLCPEDTEEYI
DYLISINKLDEAAVKLAQIVNNENFQSKHGKSNHQLWNELCELISKNPDQIHSLNVDAII
RGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE
LSLSKKMEEVAKKPSPTEDDDIDLELRLARFEYLMERRLLLLNSVLLRQNPHNVAEWHKR
VKLYEDKPHEIIDTYTEAVQTVDPKLAVGKLYTLWVGFAKFYEKNEQIEDARLIFEKATQ
VNYAKVDDLASVWCEWAEMEIRHENYEDALQLMQRATVLPTRKVAYHDDTETVQMRLYKS
LKVWSMYADLEESFGTYKSCKAVYDHIIDLKIATPQIIINYGLFLEEHNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGSKLERARDLFEQCLEHCPPEFAKSIFLLYAKLE
EEHGLARHAMAVYERATTAVLTEEMFEMFNIYIKKAAEIYGVPKTRQIYEKAIETLPDDK
AREMCVRFSEMETRLGEIDRARAIYAHCSQMCDPRITADFWNTWKEFEVRHGNEDTMREM
LRIKRSVQATYNTQVNMMSAQMLSSAAQAAGTVSDLAPGMKDGMRMLEAKAAEMAVQSKG
NISFVRGETQGLKESADKVVNPDEIDIDEDSENSEDEGEVAPVQKKEIPAAVFGGLVKDT
D
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgcctatcctcgacgggaaagaaatcgatatattcttcagtgaagaagatctgccatat
gaggaagaaatattgaggaatcctttctcagtcaaacattggcttagatacatagaacac
aagaaagccgcacctaaacatgaaataaatatgatctatgagagagctctaaaagagtta
cctggatcatttaaactgtggtacaactatctcaaacttaggagaagtcaaatacgaggc
aaatgcattactgacccttgttttgaggatgtcaataattgttttgaaagatcattagtg
tttatgcataaaatgccaaggatatggatggactactgcacattcctcactgatcaatgt
aagataacaggaacaagaaaagcctttgatagtgctctgagggctttaccaataacacag
catcacagaatatggcccctttacctgagctttctaaaaaaacataatatttctgaaaca
gcagtgagggtctttagaagatatctcaaattatgtccagaagatactgaagaatacatt
gattatttaatttcaattaacaaattggatgaagctgcagttaagttagctcaaatagta
aacaatgaaaattttcaatcaaaacatggaaaatctaaccatcagctgtggaatgaactc
tgtgaattaatttctaaaaaccctgatcaaattcattctcttaacgtggatgccatcatt
agaggtggattaagacgttatactgaccagctaggacatttatggaattctcttgctgat
tactatgtaagaagtggattatttgaaagagctcgagacatctatgaagaagctatacaa
actgtcaccactgtaagagattttactcaagtatttgatgcctatgcccaatttgaagaa
ttgagtttgagcaagaaaatggaagaagttgctaaaaagcctagccctactgaagatgat
gatatagatcttgaactaagacttgctagatttgaataccttatggaaagaagattatta
ctgctgaactctgtacttctgagacaaaaccctcataatgtggctgagtggcataagaga
gttaaactttatgaagataaaccacatgagatcattgatacctacactgaggctgtacaa
acagtagatcctaaactagctgttggtaaattgtacaccttgtgggtaggctttgcaaaa
ttttatgaaaaaaatgagcaaatagaagatgcaaggcttatttttgaaaaggcaacacaa
gtaaactatgctaaagttgatgacctggcttcagtctggtgtgaatgggcagaaatggaa
attagacatgaaaactatgaagatgccttgcagcttatgcaaagagctactgttttgcca
accagaaaagttgcataccatgatgatacggagacagtgcagatgaggttgtataaatcc
ttaaaagtctggtctatgtatgcagatttagaagaaagttttggtacttataaatcatgt
aaagcagtttatgatcacataatagacttaaaaattgcaaccccacaaattataataaat
tatggcctctttttagaggaacacaactactttgaagaagcttttagagcatatgaaaaa
ggtatagcattatttaagtggccaaatgtttatgacatttggaatacatatctaaccaaa
tttttaaaaagatatggtgggtctaaacttgagagagctagggatttatttgaacaatgt
cttgaacattgcccaccagaatttgcaaaatccatttttctactatatgcaaagttagaa
gaagagcatggattggcaagacatgctatggctgtttatgaaagggcaaccactgctgtc
ctaactgaagaaatgtttgaaatgtttaatatttacattaaaaaagctgctgaaatatat
ggtgtacctaagacacgtcaaatatatgaaaaggccattgaaactcttcctgatgacaaa
gcaagggagatgtgtgtacgtttttctgaaatggaaactcgccttggcgaaattgacaga
gcccgcgctatctatgcacattgtagtcaaatgtgtgaccctagaattacagcagacttt
tggaacacatggaaagagtttgaagtacgacatggaaatgaagacacaatgagggaaatg
ctaagaattaaacgaagtgttcaggccacatataacacgcaagttaatatgatgtcagct
caaatgttgagttcagcagctcaagcagcaggtactgtttcagatcttgcgcctggtatg
aaggatggtatgagaatgttggaggctaaagctgctgagatggctgttcaaagcaagggt
aatatttcatttgtacgaggtgaaacccaaggcctcaaggagagtgctgataaagtggtt
aatcctgatgaaattgacatagatgaagattcagaaaacagtgaagatgagggagaagtt
gctcctgtacagaaaaaagaaattcctgctgctgtttttggagggcttgttaaagacact
gactga
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